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LC768468.1__BEH84562.1__X__00001

Bact-Vir

LC768468.1__BEH84562.1__X__00001

Identity

Accession:
LC768468 ↗
Kingdom:
phage

Quality

64.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_phiKp_7-2

TaxID: 2979964

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 461-512
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5l92A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.74 58.0 3.38e-01 96.2% 11.1%
2iqiB00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.67 60.0 4.09e-01 98.1% 36.8%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 54.0 3.78e-01 98.1% 44.4%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 54.0 3.77e-01 100.0% 30.1%
8g3lE01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.57 47.0 3.16e-01 88.5% 42.7%
1k2xB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.56 45.0 3.49e-01 98.1% 77.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3954913 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 69.0 5.25e-01 100.0% 41.7%
3661421 7512.1.1.1 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDPGT 0.75 65.0 4.53e-01 98.1% 57.1%
3937632 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.52 48.0 3.25e-01 100.0% 84.0%
D2 medium residues 1-83
PDB
D3 medium residues 132-269
PDB
Domain cluster: rep: KR296690.1__AKJ74010.1__SP36_38__00038__D1-98
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wpeA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.67 46.0 3.68e-01 70.3% 35.6%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 26.0 2.99e-01 81.9% 48.1%
2d1lA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.63 50.0 4.08e-01 83.3% 65.1%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.62 49.0 4.13e-01 83.3% 69.3%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.56 42.0 4.20e-01 77.5% 77.3%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 39.0 3.81e-01 72.5% 89.3%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 41.0 3.75e-01 84.1% 68.1%
3q2qA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 38.0 2.90e-01 76.1% 60.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934585 3755.3.1.465 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A 0.77 44.0 4.26e-01 73.9% 51.3%
3634169 4177.1.1.27 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_4 0.71 50.0 3.92e-01 71.0% 79.3%
3546181 4177.1.1.3 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Arfaptin 0.71 57.0 4.61e-01 85.5% 85.7%
3416168 4177.1.1.4 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › IMD 0.66 52.0 4.42e-01 83.3% 70.5%
4136919 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 49.0 4.44e-01 77.5% 64.9%
3784582 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.65 52.0 4.27e-01 85.5% 93.7%
3180975 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.63 47.0 4.25e-01 80.4% 56.3%
3715005 604.8.1.0 ↗ alpha bundles › Spectrin repeat-like › Smac/diablo › Smac/diablo 0.63 47.0 4.52e-01 77.5% 70.0%
3896730 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 40.0 4.05e-01 77.5% 64.4%
3797475 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.62 50.0 4.16e-01 85.5% 90.8%
3767239 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.60 47.0 3.67e-01 83.3% 67.1%
4025148 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.59 38.0 3.85e-01 80.4% 64.4%
3737920 1065.1.1.0 ↗ alpha bundles › SPX domain › SPX domain › SPX domain 0.59 43.0 3.99e-01 90.6% 60.0%
4160480 3615.1.1.0 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.59 48.0 4.00e-01 85.5% 65.5%
3458391 109.4.1.235 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 0.54 39.0 3.10e-01 73.9% 56.4%
3970013 1075.4.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.52 47.0 3.57e-01 97.1% 55.3%
D4 medium residues 394-448
PDB