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LC768484.1__BEH88001.1__X__00039

Bact-Vir

LC768484.1__BEH88001.1__X__00039

Identity

Accession:
LC768484 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.70 53.0 4.35e-01 81.8% 98.4%
2oqhA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 51.0 4.33e-01 83.3% 96.5%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 50.0 3.96e-01 80.3% 82.3%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 54.0 4.38e-01 92.4% 99.3%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 54.0 4.43e-01 90.9% 95.2%
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 52.0 3.26e-01 90.9% 81.8%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 48.0 3.94e-01 83.3% 96.0%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.62 53.0 4.08e-01 100.0% 51.8%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.62 46.0 4.22e-01 80.3% 98.9%
3vsfC01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 49.0 3.12e-01 87.9% 37.4%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 50.0 3.58e-01 95.5% 58.0%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.61 43.0 4.03e-01 75.8% 100.0%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 42.0 4.04e-01 98.5% 64.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 35.0 3.74e-01 92.4% 67.9%
2vhfB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 3.10e-01 93.9% 97.0%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.58 49.0 4.57e-01 98.5% 88.6%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.35e-01 89.4% 50.8%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 47.0 3.13e-01 100.0% 97.8%
3unbF00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 43.0 2.98e-01 84.8% 83.2%
6muwH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 40.0 2.93e-01 75.8% 69.4%
5hz7A01 3.30.700.50 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.56 48.0 4.07e-01 100.0% 99.1%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 42.0 4.22e-01 100.0% 82.1%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 3.68e-01 84.8% 89.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 37.0 4.10e-01 80.3% 95.8%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 44.0 3.22e-01 95.5% 90.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 43.0 3.07e-01 90.9% 75.7%
1wr2A01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 39.0 3.06e-01 75.8% 75.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.76e-01 83.3% 69.6%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.55 40.0 3.01e-01 80.3% 94.9%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.26e-01 89.4% 54.2%
1llnA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.53 38.0 2.90e-01 77.3% 71.4%
2iv2X01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.53 36.0 3.90e-01 72.7% 94.5%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 42.0 3.10e-01 89.4% 52.2%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 42.0 3.59e-01 95.5% 54.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 41.0 3.94e-01 89.4% 88.5%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 40.0 3.69e-01 84.8% 97.8%
4pn0C00 3.20.100.10 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › mRNA triphosphatase Cet1-like 0.52 44.0 3.06e-01 100.0% 68.4%
8p2aA01 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.52 40.0 3.75e-01 87.9% 100.0%
1lp8A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 37.0 2.83e-01 78.8% 70.2%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 41.0 3.02e-01 89.4% 52.7%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.38e-01 78.8% 69.2%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.51 35.0 3.22e-01 72.7% 93.4%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 38.0 3.36e-01 86.4% 96.4%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.73e-01 83.3% 77.9%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.51 44.0 3.64e-01 100.0% 89.5%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 41.0 3.23e-01 92.4% 84.0%
2napA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.50 35.0 3.69e-01 75.8% 89.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.19e-01 89.4% 78.7%
141833 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.63 46.0 4.28e-01 78.8% 98.8%
3581854 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 43.0 3.94e-01 93.9% 54.4%
3368254 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.61 37.0 4.01e-01 93.9% 72.7%
5024242 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.61 51.0 4.02e-01 98.5% 48.4%
224808 11.1.1.194 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM9_2 0.61 50.0 3.58e-01 95.5% 58.0%
3193239 5.1.4.38 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.61 44.0 2.73e-01 80.3% 13.8%
3300074 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.64e-01 83.3% 94.4%
3809146 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.60 48.0 4.41e-01 90.9% 96.7%
5016167 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.60 50.0 3.87e-01 100.0% 46.5%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 35.0 3.61e-01 93.9% 60.0%
3926118 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.59 43.0 4.49e-01 80.3% 91.7%
3592488 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 45.0 3.01e-01 90.9% 94.5%
5029261 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 48.0 3.77e-01 93.9% 84.0%
3507107 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 47.0 3.10e-01 92.4% 77.8%
3660244 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.58 48.0 4.69e-01 93.9% 98.7%
5057532 101.1.2.893 alpha arrays › HTH › HTH › winged helix domain › DUF2226 0.58 48.0 3.27e-01 98.5% 61.8%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.21e-01 86.4% 85.9%
3660755 4.8.1.21 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PTM_DIR17_Tudor 0.58 47.0 4.55e-01 90.9% 96.0%
3300051 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.57 41.0 4.03e-01 83.3% 69.3%
None 0.57 46.0 3.41e-01 90.9% 84.3%
3676844 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.11e-01 83.3% 70.7%
2756455 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.57 43.0 3.96e-01 83.3% 96.6%
3584364 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.37e-01 84.8% 100.0%
1031172 4.1.1.113 beta barrels › SH3 › SH3 › SH3 › TraI_2B 0.57 42.0 4.19e-01 84.8% 76.4%
3301015 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 4.40e-01 84.8% 93.8%
1841016 79.1.1.9 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp34_trimer 0.57 37.0 2.58e-01 71.2% 18.7%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 43.0 3.55e-01 87.9% 96.2%
5025364 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 41.0 3.99e-01 89.4% 72.0%
138255 9.1.1.6 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.56 42.0 3.66e-01 84.8% 88.9%
3342430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.17e-01 84.8% 74.7%
3178905 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.56 40.0 3.14e-01 77.3% 51.4%
3707634 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 34.0 3.71e-01 92.4% 74.5%
3448975 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.55 42.0 4.30e-01 86.4% 92.3%
3850775 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.55 39.0 3.93e-01 83.3% 76.9%
3262671 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 39.0 2.30e-01 80.3% 22.0%
1756511 6.1.1.15 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ins145_P3_rec 0.54 41.0 3.04e-01 86.4% 93.4%
4311344 4252.1.1.13 beta barrels › AttH-like › AttH-like › AttH-like › PF27123 0.53 43.0 3.65e-01 92.4% 93.9%
3737903 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.53 32.0 3.46e-01 97.0% 72.7%
5080017 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.53 43.0 3.39e-01 97.0% 93.1%
4944450 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.53 43.0 3.40e-01 98.5% 90.6%
1219851 233.1.1.7 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › 2L_N_poxvirus 0.52 42.0 3.10e-01 89.4% 52.2%
1144780 219.1.1.69 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GtgE 0.52 42.0 3.59e-01 95.5% 54.0%
3372243 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.66e-01 90.9% 66.3%
3558188 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.52 39.0 3.75e-01 84.8% 70.7%
396031 4.22.1.1 beta barrels › SH3 › Hypothetical protein ORF131 › Hypothetical protein ORF131 › PSV_ORF131-like_dom 0.52 37.0 3.32e-01 78.8% 61.4%
3795223 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 3.89e-01 93.9% 100.0%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.52 37.0 3.81e-01 90.9% 83.1%
1219772 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.52 41.0 3.04e-01 89.4% 53.8%
4012738 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.52 35.0 2.89e-01 71.2% 39.3%
4038568 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.52 43.0 3.13e-01 92.4% 84.7%
3782888 633.33.1.1 alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz 0.51 40.0 2.75e-01 89.4% 72.1%
3533770 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.51 36.0 3.20e-01 84.8% 48.6%
150881 233.1.1.0 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain 0.51 41.0 3.23e-01 92.4% 84.0%
3304299 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 36.0 3.30e-01 90.9% 55.4%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.51 42.0 3.14e-01 95.5% 52.2%
3622645 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 38.0 3.45e-01 90.9% 58.9%
5018904 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.50 45.0 3.22e-01 100.0% 37.4%
5080336 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 37.0 3.73e-01 89.4% 82.8%
4157193 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.50 37.0 3.71e-01 90.9% 78.6%
4432457 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.50 36.0 3.60e-01 89.4% 75.7%