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LC768485.1__BEH88075.1__X__00028

Bact-Vir

LC768485.1__BEH88075.1__X__00028

Identity

Accession:
LC768485 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alcyoneusvirus› Klebsiella_phage_phiKp_21

TaxID: 2979978

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-66
PDB
Domain cluster: rep: OR228459.1__WNV47504.1__X__00391__D6-55
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 3.88e-01 96.1% 55.2%
1sr4C00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 51.0 3.75e-01 100.0% 87.0%
2ckaA01 3.40.5.120 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.61 45.0 4.62e-01 94.1% 85.7%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 4.09e-01 96.1% 57.0%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 45.0 3.78e-01 96.1% 47.3%
1s04A00 2.30.130.30 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. 0.57 42.0 3.31e-01 80.4% 74.5%
3kalB05 3.30.1490.50 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain 0.56 40.0 3.87e-01 100.0% 66.1%
2j58A03 3.30.1950.10 Alpha Beta › 2-Layer Sandwich › wza like fold › wza like domain 0.56 45.0 4.03e-01 98.0% 97.5%
2fyxA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.55 44.0 3.48e-01 100.0% 77.7%
3no8A00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.54 45.0 3.25e-01 98.0% 33.1%
2g5gX01 3.40.50.11550 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 44.0 3.06e-01 98.0% 97.4%
5amhA00 2.170.150.20 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. 0.54 44.0 3.55e-01 96.1% 100.0%
3l2pA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.53 46.0 3.53e-01 100.0% 60.8%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.57e-01 98.0% 53.5%
4gvbA00 3.30.70.440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Killer toxin KP6 alpha-subunit 0.52 43.0 3.88e-01 98.0% 81.8%
2hgsA01 3.30.1490.80 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 38.0 3.36e-01 88.2% 90.8%
2mzsA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 40.0 3.36e-01 94.1% 78.8%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.50 40.0 3.59e-01 100.0% 95.2%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.50 41.0 3.66e-01 100.0% 75.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3859106 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 51.0 5.39e-01 100.0% 93.3%
4961425 7523.1.1.8 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.65 54.0 3.62e-01 100.0% 70.5%
4126826 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.62 50.0 4.25e-01 94.1% 65.6%
3234045 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.59 44.0 3.45e-01 84.3% 55.0%
4449102 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.58 47.0 3.97e-01 92.2% 65.6%
4999285 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.58 49.0 3.33e-01 98.0% 54.3%
3184485 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.58 49.0 3.93e-01 100.0% 72.2%
3397821 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 2.91e-01 100.0% 22.1%
185863 206.1.3.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.55 44.0 3.69e-01 100.0% 48.1%
3783139 304.9.1.71 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SNU71_RBD 0.55 41.0 3.57e-01 86.3% 48.9%
3533739 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 44.0 3.58e-01 96.1% 100.0%
4945301 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 2.84e-01 78.4% 86.0%
3747259 822.2.1.1 ↗ a+b two layers › GYF/BRK domain-like › BRK domain-like › BRK domain-like › BRK 0.53 43.0 4.18e-01 96.1% 90.0%
4046347 7575.1.1.2 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C25 0.52 41.0 2.83e-01 94.1% 48.4%
5070409 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.52 41.0 3.64e-01 100.0% 64.8%
3695272 221.1.1.93 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.51 41.0 3.14e-01 94.1% 63.0%