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LC768485.1__BEH88165.1__X__00118

Bact-Vir

LC768485.1__BEH88165.1__X__00118

Identity

Accession:
LC768485 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alcyoneusvirus› Klebsiella_phage_phiKp_21

TaxID: 2979978

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-78_438-474
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0xA04 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.60 42.0 3.52e-01 74.7% 69.3%
2kz6A01 6.10.140.1310 Special › Helix non-globular › Helix Hairpins › 0.55 31.0 3.05e-01 94.7% 51.9%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.54 31.0 3.17e-01 90.7% 57.5%
3n5lA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 28.0 3.24e-01 98.7% 66.7%
7febA03 3.40.50.12790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 0.53 31.0 3.00e-01 84.0% 46.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939109 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 2.98e-01 93.3% 29.4%
5081700 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 39.0 3.05e-01 84.0% 63.0%
D2 medium residues 93-202_399-415
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.80 76.0 6.37e-01 100.0% 90.6%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.79 70.0 6.76e-01 100.0% 84.8%
1am2A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 74.0 6.47e-01 100.0% 90.1%
1at0A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 74.0 7.07e-01 100.0% 88.3%
1mi8A00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.78 71.0 6.82e-01 100.0% 85.8%
2jmzA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.76 71.0 6.40e-01 100.0% 88.7%
6zgqA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.75 71.0 6.75e-01 100.0% 87.8%
2lcjA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.75 70.0 6.09e-01 100.0% 90.8%
2cw8A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.75 71.0 6.32e-01 100.0% 89.3%
4e2tB00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.74 70.0 6.27e-01 100.0% 89.9%
6vgwA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.74 68.0 6.51e-01 100.0% 86.5%
2imzA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.72 68.0 6.51e-01 100.0% 90.1%
1zdeA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.71 67.0 6.12e-01 100.0% 82.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 23.0 3.32e-01 96.1% 62.9%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.54 30.0 2.96e-01 81.9% 49.2%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4180552 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.93 90.0 8.05e-01 100.0% 88.5%
4993732 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.88 71.0 7.17e-01 100.0% 84.0%
4994372 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.87 71.0 7.35e-01 100.0% 89.2%
2553113 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.86 72.0 7.21e-01 100.0% 85.2%
4680886 69.1.1.14 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint_2 0.86 81.0 7.33e-01 100.0% 89.7%
5037092 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 38.0 5.28e-01 100.0% 81.4%
3174953 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.83 79.0 6.33e-01 100.0% 93.0%
2546507 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.80 75.0 7.20e-01 100.0% 88.1%
3602706 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.80 71.0 6.93e-01 100.0% 86.2%
4950409 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.80 75.0 6.97e-01 100.0% 83.2%
1758564 69.1.1.2 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint 0.79 66.0 5.84e-01 86.6% 96.0%
5035476 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.79 75.0 6.86e-01 100.0% 88.1%
259963 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.79 70.0 6.76e-01 100.0% 84.8%
4243055 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 75.0 6.35e-01 100.0% 65.6%
4941327 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 75.0 7.09e-01 100.0% 93.1%
3949584 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 75.0 7.03e-01 100.0% 90.0%
3934143 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.79 74.0 7.13e-01 100.0% 89.3%
4045174 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.79 74.0 6.71e-01 100.0% 85.5%
4979989 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 74.0 6.45e-01 100.0% 87.8%
4544734 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 74.0 6.12e-01 100.0% 91.9%
4274856 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 74.0 6.66e-01 100.0% 89.7%
4084747 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.78 74.0 5.34e-01 100.0% 94.7%
3963364 69.1.1.3 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › PT-HINT 0.78 70.0 6.65e-01 100.0% 82.1%
3861422 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.78 74.0 6.33e-01 100.0% 68.4%
5066163 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.78 72.0 6.95e-01 100.0% 88.6%
3603108 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.78 70.0 6.67e-01 100.0% 83.4%
5031634 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 74.0 6.74e-01 100.0% 84.4%
4999902 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 72.0 6.85e-01 100.0% 86.2%
4946209 69.1.1.18 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › DNA_topoisoIV 0.77 74.0 6.11e-01 100.0% 92.2%
5052154 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 73.0 6.62e-01 100.0% 89.7%
2524072 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 73.0 6.53e-01 100.0% 89.4%
4996401 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 72.0 6.60e-01 100.0% 86.3%
4948016 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.77 73.0 6.84e-01 100.0% 90.0%
5023539 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.77 73.0 6.74e-01 100.0% 91.0%
5014854 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.76 72.0 5.92e-01 100.0% 90.2%
4993454 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 72.0 5.73e-01 100.0% 91.1%
4993813 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 72.0 6.60e-01 100.0% 87.5%
4342207 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.76 72.0 6.74e-01 100.0% 89.3%
4975503 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.76 72.0 6.28e-01 100.0% 90.6%
4977673 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 71.0 5.75e-01 100.0% 92.0%
4993480 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.75 71.0 6.49e-01 100.0% 87.5%
182766 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.75 70.0 6.09e-01 100.0% 90.8%
4934481 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 69.0 6.58e-01 100.0% 90.5%
5029355 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 70.0 6.59e-01 100.0% 89.3%
4970868 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 62.0 6.28e-01 86.6% 100.0%
4997604 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 70.0 6.27e-01 100.0% 85.9%
4930433 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 70.0 6.48e-01 100.0% 88.4%
5065032 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.74 70.0 6.33e-01 100.0% 81.8%
4975971 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.74 61.0 6.12e-01 98.4% 85.4%
5013038 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 69.0 6.34e-01 100.0% 87.5%
4998394 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 70.0 6.45e-01 100.0% 92.9%
5032319 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 69.0 6.52e-01 100.0% 88.7%
5028299 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.73 68.0 6.36e-01 100.0% 89.7%
4565870 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.73 69.0 6.39e-01 100.0% 85.2%
4940943 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.73 69.0 6.16e-01 100.0% 88.8%
4984220 69.1.1.0 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.72 66.0 6.17e-01 99.2% 91.0%
3603738 69.1.1.4 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Intein_splicing 0.70 65.0 6.27e-01 100.0% 89.3%
4932851 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.69 61.0 6.00e-01 100.0% 88.9%
D3 medium residues 209-228_303-327_370-398
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4968515 305.2.1.0 ↗ a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.50 29.0 3.09e-01 86.5% 65.1%
D4 medium residues 635-651_788-871
PDB
Domain cluster: rep: OQ508957.1__WGH49867.1__X__00151__D274-289_412-494
D5 medium residues 652-787
PDB
Domain cluster: rep: NC_005856.1__YP_006576.1__P1_gp110__00106__D281-382