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LC768486.1__BEH88169.1__X__00001

Bact-Vir

LC768486.1__BEH88169.1__X__00001

Identity

Accession:
LC768486 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alcyoneusvirus› Klebsiella_phage_phiKp_21

TaxID: 2979978

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-95
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 38.0 4.35e-01 100.0% 78.3%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.60 38.0 3.90e-01 97.8% 65.9%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.67e-01 97.8% 94.6%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 38.0 3.37e-01 97.8% 46.6%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.57 52.0 4.64e-01 100.0% 89.4%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 3.83e-01 93.5% 65.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.26e-01 100.0% 87.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.57 40.0 3.56e-01 75.3% 73.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.38e-01 82.8% 98.5%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 48.0 3.86e-01 94.6% 76.1%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.25e-01 100.0% 82.6%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.56 38.0 4.16e-01 100.0% 87.0%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.56 38.0 3.82e-01 100.0% 69.9%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.55 41.0 3.23e-01 100.0% 37.6%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.54 37.0 3.77e-01 100.0% 71.9%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 35.0 3.49e-01 98.9% 62.6%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 36.0 4.13e-01 96.8% 94.1%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 43.0 3.79e-01 89.2% 83.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.31e-01 100.0% 47.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.10e-01 78.5% 98.8%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.52 42.0 3.33e-01 87.1% 58.8%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 38.0 3.60e-01 100.0% 64.9%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 44.0 3.10e-01 96.8% 79.4%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 44.0 4.04e-01 100.0% 72.6%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.50 35.0 2.89e-01 72.0% 95.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.73 46.0 5.06e-01 93.5% 78.7%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 4.87e-01 98.9% 80.0%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 39.0 4.72e-01 97.8% 85.5%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 42.0 4.38e-01 97.8% 67.1%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 39.0 4.97e-01 95.7% 100.0%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 38.0 4.39e-01 97.8% 81.5%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 40.0 4.07e-01 100.0% 64.4%
3372243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 43.0 4.58e-01 100.0% 80.0%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.63 38.0 3.03e-01 100.0% 30.6%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.63 38.0 4.62e-01 97.8% 100.0%
3510786 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.63 40.0 4.67e-01 100.0% 92.3%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.62 37.0 3.88e-01 97.8% 64.7%
2527304 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 39.0 4.70e-01 100.0% 100.0%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 36.0 4.50e-01 97.8% 100.0%
4592324 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.61 42.0 4.33e-01 100.0% 74.4%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 40.0 4.15e-01 100.0% 71.1%
3409587 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.60 39.0 3.96e-01 100.0% 66.7%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 37.0 4.49e-01 97.8% 100.0%
3607985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.08e-01 100.0% 65.7%
4330191 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.59 43.0 3.37e-01 94.6% 34.3%
4438946 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 38.0 4.03e-01 98.9% 71.8%
4649925 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.59 43.0 3.39e-01 94.6% 35.1%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.59 40.0 4.52e-01 98.9% 92.9%
3224870 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.58 53.0 4.77e-01 100.0% 96.8%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 38.0 4.45e-01 100.0% 96.9%
4391995 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 37.0 3.93e-01 100.0% 71.8%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 37.0 4.18e-01 100.0% 87.1%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 36.0 4.19e-01 100.0% 92.2%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 38.0 4.22e-01 97.8% 85.3%
3740208 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.57 38.0 4.36e-01 100.0% 96.9%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 37.0 4.28e-01 100.0% 95.4%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.57 39.0 3.75e-01 100.0% 61.9%
3500703 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.57 52.0 4.55e-01 100.0% 89.6%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.57 41.0 4.53e-01 100.0% 94.7%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.57 37.0 3.54e-01 100.0% 56.4%
4188663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 38.0 3.85e-01 100.0% 68.4%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.56 37.0 4.10e-01 100.0% 84.0%
3966626 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 38.0 3.90e-01 100.0% 71.1%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 35.0 3.62e-01 100.0% 65.6%
4156970 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 42.0 3.84e-01 100.0% 60.8%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 36.0 4.03e-01 100.0% 87.1%
3476178 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 36.0 3.31e-01 100.0% 50.0%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 38.0 3.25e-01 100.0% 44.0%
4493188 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 38.0 3.78e-01 100.0% 67.4%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.56 36.0 3.74e-01 100.0% 68.9%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.56 38.0 3.91e-01 100.0% 73.3%
4055193 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 38.0 3.83e-01 100.0% 69.5%
3227009 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.55 38.0 4.08e-01 71.0% 100.0%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.54 37.0 4.13e-01 100.0% 94.1%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.54 37.0 4.05e-01 95.7% 86.7%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.54 39.0 4.21e-01 98.9% 92.0%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.92e-01 100.0% 81.2%
4060133 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 37.0 3.84e-01 100.0% 73.3%
4042679 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 36.0 3.80e-01 100.0% 75.3%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.91e-01 100.0% 77.8%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.53 36.0 3.71e-01 100.0% 73.3%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.53 36.0 4.04e-01 100.0% 97.1%
3834303 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.53 45.0 2.86e-01 93.5% 24.4%
4666540 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 35.0 3.70e-01 100.0% 76.5%
4147685 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.52 38.0 3.65e-01 100.0% 66.4%
4619658 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 35.0 3.54e-01 100.0% 68.4%
3923769 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 41.0 4.36e-01 96.8% 97.5%
3584571 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.51 40.0 2.95e-01 100.0% 32.8%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.51 40.0 4.22e-01 97.8% 92.9%
4353877 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.51 35.0 3.51e-01 100.0% 69.5%
4425722 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.51 35.0 3.59e-01 100.0% 73.3%
3725951 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 45.0 3.86e-01 100.0% 91.3%