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LC768486.1__BEH88170.1__X__00002

Bact-Vir

LC768486.1__BEH88170.1__X__00002

Identity

Accession:
LC768486 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alcyoneusvirus› Klebsiella_phage_phiKp_21

TaxID: 2979978

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-89
PDB
Domain cluster: rep: ON286972.1__USL83490.1__A4_414__00169__D3-85
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 44.0 5.14e-01 100.0% 85.7%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 32.0 4.17e-01 85.1% 77.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 42.0 4.63e-01 100.0% 75.4%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 45.0 3.75e-01 75.9% 40.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 42.0 4.90e-01 100.0% 90.3%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 3.94e-01 72.4% 83.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 41.0 4.63e-01 90.8% 86.4%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 3.74e-01 100.0% 45.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.15e-01 93.1% 63.0%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.62 41.0 4.08e-01 100.0% 64.5%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.54e-01 72.4% 81.6%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.70e-01 97.7% 91.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.30e-01 100.0% 84.4%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 43.0 4.11e-01 100.0% 68.3%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 3.52e-01 100.0% 45.7%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.57 38.0 3.78e-01 100.0% 66.3%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 39.0 3.86e-01 100.0% 71.4%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 42.0 3.82e-01 100.0% 63.2%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 36.0 3.35e-01 98.9% 55.0%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 39.0 3.87e-01 100.0% 71.3%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.53 42.0 3.35e-01 88.5% 71.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.10e-01 80.5% 96.4%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 38.0 4.21e-01 98.9% 95.6%
1k0rA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.52 41.0 3.99e-01 93.1% 77.8%
3jb9F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.94e-01 98.9% 84.1%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3918299 4.1.1.376 ↗ beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.74 53.0 5.77e-01 73.6% 100.0%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 45.0 5.53e-01 97.7% 100.0%
3818428 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.72 48.0 5.20e-01 100.0% 80.0%
3450200 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 44.0 4.53e-01 97.7% 64.7%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 41.0 4.72e-01 97.7% 78.5%
3423337 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.71 47.0 4.94e-01 100.0% 75.0%
3622139 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 45.0 4.44e-01 100.0% 62.2%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.70 44.0 5.33e-01 100.0% 100.0%
3315100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 41.0 4.73e-01 98.9% 80.0%
3372243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.92e-01 100.0% 76.2%
3669494 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 42.0 3.49e-01 100.0% 36.0%
3300051 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.69 44.0 4.73e-01 93.1% 76.0%
3866038 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.68 43.0 4.36e-01 100.0% 64.7%
3510786 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.68 44.0 5.02e-01 100.0% 89.2%
3607985 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 48.0 4.48e-01 100.0% 61.9%
3558188 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.66 42.0 4.51e-01 95.4% 74.7%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 44.0 3.97e-01 100.0% 51.3%
1567496 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.66 41.0 4.89e-01 97.7% 96.5%
2527304 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 43.0 5.02e-01 100.0% 96.7%
3533770 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.65 43.0 4.06e-01 100.0% 56.2%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 42.0 4.41e-01 100.0% 72.5%
5021529 604.39.1.9 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 0.64 52.0 4.01e-01 90.8% 94.3%
3824699 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 42.0 4.80e-01 97.7% 90.8%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.34e-01 100.0% 68.9%
3486496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.67e-01 100.0% 98.2%
3935469 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.63 44.0 4.91e-01 100.0% 91.4%
3230082 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 40.0 3.85e-01 100.0% 56.0%
3886139 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 43.0 4.85e-01 100.0% 93.8%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 41.0 4.46e-01 100.0% 82.9%
3451171 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.69e-01 100.0% 90.8%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 41.0 3.85e-01 100.0% 54.5%
4438946 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 42.0 4.26e-01 100.0% 70.6%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.61 40.0 4.04e-01 100.0% 65.6%
3500542 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 39.0 3.94e-01 100.0% 63.3%
3224870 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.61 55.0 4.86e-01 100.0% 93.6%
3936885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.78e-01 98.9% 98.5%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 39.0 4.45e-01 100.0% 90.6%
5053224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.71e-01 92.0% 100.0%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 41.0 4.39e-01 100.0% 82.7%
4330191 304.102.1.0 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.60 45.0 3.42e-01 93.1% 33.3%
3931055 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.60 46.0 4.98e-01 100.0% 94.7%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.16e-01 100.0% 78.7%
4682440 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 39.0 3.86e-01 100.0% 62.1%
4975714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 36.0 4.37e-01 90.8% 98.2%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 36.0 4.25e-01 97.7% 96.4%
3500703 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.58 52.0 4.50e-01 100.0% 87.4%
3966626 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 38.0 3.83e-01 100.0% 65.6%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 40.0 4.26e-01 97.7% 82.7%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.21e-01 100.0% 80.0%
4055193 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 39.0 3.84e-01 100.0% 64.2%
4649925 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.57 43.0 3.34e-01 93.1% 34.6%
4302391 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.57 41.0 4.53e-01 100.0% 100.0%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 40.0 4.00e-01 100.0% 71.1%
3227009 4.1.1.71 ↗ beta barrels › SH3 › SH3 › SH3 › Gemin7 0.57 41.0 4.31e-01 75.9% 100.0%
4188663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 38.0 3.76e-01 100.0% 64.2%
3983246 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.56 38.0 3.71e-01 100.0% 63.2%
4031510 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 41.0 4.07e-01 100.0% 74.4%
4927410 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.56 42.0 3.21e-01 93.1% 32.0%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 38.0 4.24e-01 100.0% 93.8%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.56 39.0 3.89e-01 100.0% 71.1%
4890601 1.1.7.93 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D3, GTP_EFTU_D2 0.55 39.0 3.72e-01 100.0% 63.6%
4034320 4.1.1.398 ↗ beta barrels › SH3 › SH3 › SH3 › YolD 0.55 38.0 4.18e-01 100.0% 92.6%
4190012 304.102.1.7 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C 0.54 41.0 3.09e-01 93.1% 31.6%
3923769 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 45.0 4.69e-01 98.9% 97.5%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.54 47.0 4.65e-01 100.0% 91.1%
3721062 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.53 44.0 4.54e-01 100.0% 92.9%
5025364 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.53 39.0 4.17e-01 100.0% 90.7%
3205559 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.53 46.0 3.88e-01 100.0% 57.2%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.53 37.0 4.01e-01 100.0% 92.6%
3834303 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.52 45.0 2.85e-01 96.6% 24.2%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.52 45.0 4.15e-01 100.0% 73.0%
4163756 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.52 35.0 3.46e-01 100.0% 64.2%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.60e-01 95.4% 90.6%
3691620 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.51 47.0 4.25e-01 100.0% 78.3%
5081442 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.51 36.0 3.92e-01 97.7% 92.9%
3259547 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 45.0 4.15e-01 100.0% 78.3%
3584571 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.50 40.0 2.93e-01 96.6% 31.9%