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LC768486.1__BEH88192.1__X__00024
Bact-VirLC768486.1__BEH88192.1__X__00024
Identity
- Accession:
- LC768486 ↗
- Kingdom:
- phage
Quality
68.8
mean pLDDT
Taxonomy
TaxID: 2979978
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-73
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mt1B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.67 | 58.0 | 4.60e-01 | 100.0% | 78.6% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.67 | 46.0 | 4.55e-01 | 86.8% | 68.4% |
| 1lfpA03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.66 | 48.0 | 4.45e-01 | 81.1% | 91.8% |
| 5c17A00 | 3.30.450.410 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.65 | 56.0 | 3.81e-01 | 100.0% | 54.9% |
| 2hpuA02 | 3.30.70.2050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 45.0 | 4.26e-01 | 73.6% | 63.5% |
| 2o8rB02 | 3.30.1840.10 | Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain | 0.59 | 50.0 | 3.65e-01 | 98.1% | 54.2% |
| 4c91A01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.55 | 43.0 | 3.17e-01 | 90.6% | 70.3% |
| 1uqwA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 42.0 | 3.37e-01 | 88.7% | 95.5% |
| 3f1jA00 | 2.70.20.40 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein | 0.53 | 41.0 | 3.09e-01 | 86.8% | 80.7% |
| 4a4aA02 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.52 | 38.0 | 2.91e-01 | 79.2% | 58.5% |
| 1hd5A00 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.52 | 42.0 | 2.97e-01 | 100.0% | 55.6% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.51 | 42.0 | 3.46e-01 | 100.0% | 88.1% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.50 | 41.0 | 3.41e-01 | 100.0% | 88.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4139949 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.78 | 52.0 | 5.80e-01 | 83.0% | 92.5% |
| 3400735 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.78 | 54.0 | 5.41e-01 | 83.0% | 70.9% |
| 3414064 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.77 | 55.0 | 5.47e-01 | 79.2% | 72.7% |
| 3388590 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.71 | 52.0 | 5.02e-01 | 86.8% | 70.0% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.69 | 49.0 | 5.20e-01 | 75.5% | 95.6% |
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.69 | 51.0 | 5.24e-01 | 81.1% | 96.0% |
| 3590928 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 55.0 | 5.26e-01 | 92.5% | 76.9% |
| 3397457 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 52.0 | 5.05e-01 | 83.0% | 83.3% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.67 | 47.0 | 5.01e-01 | 75.5% | 95.6% |
| 3975705 | 3115.6.1.0 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon | 0.67 | 50.0 | 5.12e-01 | 84.9% | 88.0% |
| 4936263 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.66 | 58.0 | 3.77e-01 | 100.0% | 33.5% |
| 3400462 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.66 | 47.0 | 4.64e-01 | 83.0% | 70.7% |
| 4988225 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.65 | 55.0 | 4.27e-01 | 98.1% | 60.0% |
| 5023503 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.65 | 47.0 | 4.39e-01 | 81.1% | 92.9% |
| 4576030 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 44.0 | 3.90e-01 | 73.6% | 91.3% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.63 | 47.0 | 4.97e-01 | 84.9% | 97.8% |
| 4106367 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.62 | 47.0 | 4.75e-01 | 86.8% | 83.0% |
| 5041596 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.61 | 50.0 | 3.48e-01 | 100.0% | 32.2% |
| 3804899 | 207.1.1.133 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 | 0.60 | 46.0 | 2.80e-01 | 88.7% | 11.6% |
| 3319149 | 224.1.1.3 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen | 0.59 | 51.0 | 3.71e-01 | 100.0% | 38.1% |
| 4941857 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.55 | 43.0 | 3.00e-01 | 88.7% | 72.6% |
| 4279213 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.55 | 44.0 | 3.48e-01 | 98.1% | 99.2% |
| 3699180 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.54 | 40.0 | 3.12e-01 | 81.1% | 50.4% |
| 1345843 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.54 | 41.0 | 3.24e-01 | 86.8% | 56.8% |
| 1109145 | 54.1.1.4 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › BDV_M | 0.54 | 40.0 | 3.04e-01 | 83.0% | 75.7% |
| 3547848 | 376.1.1.107 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_NSD | 0.54 | 43.0 | 3.84e-01 | 92.5% | 87.5% |
| 4418037 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.53 | 42.0 | 3.17e-01 | 94.3% | 100.0% |
| 4187027 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.53 | 40.0 | 3.16e-01 | 96.2% | 95.3% |
| 4971088 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 45.0 | 3.50e-01 | 96.2% | 93.9% |
| 3414306 | 2498.2.1.4 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › Glycohydro_20b2 | 0.52 | 39.0 | 2.83e-01 | 88.7% | 57.2% |
| 3326623 | 221.1.1.166 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26130 | 0.51 | 36.0 | 3.33e-01 | 75.5% | 60.0% |
| 3475946 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.50 | 42.0 | 2.85e-01 | 100.0% | 62.9% |