←Back to structures
LC768486.1__BEH88206.1__X__00038
Bact-VirLC768486.1__BEH88206.1__X__00038
Identity
- Accession:
- LC768486 ↗
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Taxonomy
TaxID: 2979978
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-57
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 50.0 | 4.52e-01 | 73.1% | 86.8% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 47.0 | 4.82e-01 | 73.1% | 80.4% |
| 2f93B00 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 51.0 | 5.14e-01 | 78.8% | 82.4% |
| 3v9rB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.69 | 47.0 | 4.19e-01 | 71.2% | 58.3% |
| 3oo6A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.68 | 55.0 | 3.69e-01 | 92.3% | 80.6% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 47.0 | 3.83e-01 | 75.0% | 43.9% |
| 1twcA01 | 4.10.860.120 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › RNA polymerase II, clamp domain | 0.66 | 49.0 | 3.66e-01 | 80.8% | 76.5% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.66 | 46.0 | 4.08e-01 | 73.1% | 52.7% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.65 | 48.0 | 4.38e-01 | 98.1% | 59.2% |
| 2nr5A00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.64 | 48.0 | 4.64e-01 | 78.8% | 74.1% |
| 4mlzA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.64 | 51.0 | 3.58e-01 | 90.4% | 94.2% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 45.0 | 4.11e-01 | 75.0% | 84.5% |
| 2jfrA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.63 | 55.0 | 3.57e-01 | 98.1% | 24.8% |
| 3tdvA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.63 | 51.0 | 3.46e-01 | 92.3% | 85.4% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 44.0 | 3.31e-01 | 82.7% | 99.2% |
| 1v4gA01 | 6.10.140.800 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 43.0 | 3.96e-01 | 88.5% | 94.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839762 | 1008.1.1.0 ↗ | alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain | 0.74 | 54.0 | 4.55e-01 | 76.9% | 50.6% |
| 5048061 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.70 | 49.0 | 4.80e-01 | 73.1% | 69.1% |
| 3779372 | 220.1.1.115 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_19 | 0.66 | 45.0 | 3.11e-01 | 73.1% | 21.1% |
| 3227967 | 616.1.1.2 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › WHEP-TRS | 0.65 | 46.0 | 4.36e-01 | 73.1% | 63.3% |
| 3731364 | 3922.1.1.137 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › HisKA | 0.64 | 48.0 | 4.41e-01 | 78.8% | 72.3% |