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LC768490.1__BEH88469.1__X__00025

Bact-Vir

LC768490.1__BEH88469.1__X__00025

Identity

Accession:
LC768490 ↗
Kingdom:
phage

Quality

62.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-110
PDB
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.75 59.0 5.70e-01 84.0% 88.9%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.86e-01 85.2% 84.4%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.71 61.0 5.25e-01 93.8% 74.8%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.71 60.0 5.26e-01 93.8% 73.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.05e-01 92.6% 63.6%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.70 61.0 5.61e-01 96.3% 82.7%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.50e-01 93.8% 95.4%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.62e-01 92.6% 93.3%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.68 59.0 5.38e-01 96.3% 79.8%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 43.0 3.30e-01 93.8% 28.6%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 44.0 3.81e-01 96.3% 44.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.68e-01 79.0% 77.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 5.28e-01 98.8% 97.3%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 42.0 4.62e-01 74.1% 91.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.73e-01 85.2% 80.7%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 51.0 4.32e-01 93.8% 70.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.54e-01 76.5% 91.9%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 47.0 3.88e-01 84.0% 70.9%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 4.00e-01 87.7% 71.8%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 50.0 3.78e-01 92.6% 66.8%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.59 51.0 4.04e-01 96.3% 69.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 42.0 4.40e-01 87.7% 84.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.87e-01 93.8% 97.2%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 38.0 3.35e-01 91.4% 43.3%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.45e-01 87.7% 93.8%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.76e-01 76.5% 73.0%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.19e-01 93.8% 38.1%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.19e-01 93.8% 37.5%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.49e-01 82.7% 95.1%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 45.0 4.29e-01 91.4% 97.9%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.21e-01 74.1% 86.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 40.0 3.30e-01 81.5% 79.2%
3ghgB02 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.53 44.0 3.19e-01 97.5% 77.1%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.52e-01 84.0% 65.9%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.52 43.0 4.05e-01 90.1% 96.0%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.29e-01 79.0% 91.4%
6r3wA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.53e-01 93.8% 84.5%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.34e-01 79.0% 96.1%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.04e-01 75.3% 79.2%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 41.0 3.41e-01 85.2% 63.1%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.71e-01 87.7% 93.9%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.52 43.0 4.04e-01 91.4% 96.0%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 2.98e-01 82.7% 86.3%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.13e-01 87.7% 62.6%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.51e-01 86.4% 92.9%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 36.0 3.72e-01 82.7% 82.4%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 2.97e-01 81.5% 90.1%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 3.02e-01 81.5% 44.4%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.37e-01 85.2% 89.6%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 36.0 3.13e-01 77.8% 89.0%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 38.0 3.27e-01 84.0% 93.7%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 43.0 2.82e-01 92.6% 46.4%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 40.0 3.71e-01 91.4% 85.5%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 37.0 3.25e-01 77.8% 73.1%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3289944 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.78 61.0 5.93e-01 87.7% 75.6%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.78 61.0 5.68e-01 90.1% 68.0%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.78 64.0 5.95e-01 88.9% 73.0%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.77 64.0 6.12e-01 91.4% 76.8%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.76 61.0 6.05e-01 87.7% 82.4%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.76 58.0 6.02e-01 85.2% 86.7%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.76 63.0 5.86e-01 90.1% 73.0%
4152374 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.29e-01 90.1% 92.9%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 63.0 6.42e-01 90.1% 98.8%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.75 60.0 5.90e-01 90.1% 81.2%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.75 63.0 5.71e-01 91.4% 70.0%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 59.0 5.73e-01 87.7% 75.6%
3232582 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 62.0 5.85e-01 92.6% 74.7%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.75 61.0 5.91e-01 90.1% 80.0%
3953109 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.74 60.0 5.73e-01 90.1% 74.7%
4422325 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 62.0 6.05e-01 90.1% 95.5%
4387099 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 62.0 6.30e-01 90.1% 95.0%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 62.0 6.13e-01 90.1% 92.9%
4358168 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 62.0 5.53e-01 90.1% 69.1%
4387111 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 61.0 6.14e-01 90.1% 97.5%
3167531 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.72 60.0 5.07e-01 91.4% 62.2%
2552660 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.71 61.0 5.26e-01 93.8% 74.8%
4954224 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.71 61.0 5.83e-01 93.8% 83.2%
150293 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.71 59.0 5.66e-01 92.6% 87.5%
609 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.71 60.0 5.26e-01 93.8% 72.1%
2866962 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.71 58.0 5.26e-01 88.9% 66.7%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.70 55.0 5.54e-01 86.4% 85.0%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.73e-01 86.4% 98.5%
608 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.70 61.0 5.61e-01 96.3% 82.7%
4272564 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 58.0 5.28e-01 91.4% 68.5%
2502914 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.69 57.0 4.87e-01 90.1% 64.6%
4964141 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.69 57.0 5.60e-01 92.6% 91.1%
4024274 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.68 56.0 5.14e-01 92.6% 70.5%
5053224 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.27e-01 82.7% 100.0%
4400596 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.66 55.0 4.40e-01 92.6% 46.9%
3940730 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.21e-01 100.0% 80.0%
3713334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 45.0 5.01e-01 85.2% 100.0%
3880508 4.1.1.129 beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.63 46.0 4.38e-01 90.1% 65.3%
4519674 4.1.1.186 beta barrels › SH3 › SH3 › SH3 › DUF5397 0.63 43.0 4.83e-01 84.0% 98.3%
3719860 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.72e-01 92.6% 67.8%
591 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.62 51.0 5.26e-01 98.8% 96.1%
3704395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 46.0 5.03e-01 88.9% 100.0%
3339169 4.1.1.415 beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.62 50.0 4.97e-01 88.9% 88.2%
4668960 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 50.0 4.56e-01 91.4% 67.3%
3408330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.79e-01 100.0% 77.0%
3263743 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.61 49.0 4.22e-01 86.4% 99.2%
3272197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.87e-01 100.0% 89.5%
3845542 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.60 43.0 4.06e-01 76.5% 84.0%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.98e-01 100.0% 85.3%
3608562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 51.0 4.17e-01 97.5% 67.3%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 47.0 4.90e-01 86.4% 100.0%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 45.0 4.75e-01 82.7% 97.1%
3609256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.71e-01 91.4% 84.7%
3615426 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 49.0 4.05e-01 95.1% 64.7%
4983672 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 47.0 2.92e-01 88.9% 29.4%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 39.0 4.40e-01 75.3% 95.0%
5045243 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 47.0 3.65e-01 88.9% 87.4%
4996783 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.56 46.0 3.01e-01 88.9% 40.8%
3842576 220.1.1.67 beta barrels › PH domain-like › PH domain-like › PH domain-like › EVH1_PP4R3 0.56 41.0 3.63e-01 77.8% 69.2%
4998075 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 46.0 3.72e-01 87.7% 88.7%
4999054 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 46.0 3.64e-01 88.9% 90.3%
3218475 4.1.1.390 beta barrels › SH3 › SH3 › SH3 › PF29855 0.55 49.0 4.32e-01 100.0% 87.5%
3496242 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 34.0 4.10e-01 74.1% 100.0%
3280741 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 39.0 3.43e-01 88.9% 47.4%
2099294 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 41.0 3.49e-01 82.7% 95.1%
3493511 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.54 45.0 3.28e-01 92.6% 78.3%
3236876 1.1.5.49 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.54 47.0 3.30e-01 100.0% 72.6%
4257482 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.53 39.0 2.97e-01 81.5% 80.5%
3500755 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.53 37.0 2.74e-01 72.8% 73.8%
3744150 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.52 38.0 2.94e-01 76.5% 69.0%
3507010 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.52 43.0 4.00e-01 91.4% 89.5%
4941845 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 33.0 3.97e-01 75.3% 100.0%
3837632 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.51 42.0 2.92e-01 91.4% 50.7%
4962493 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.50 40.0 3.90e-01 91.4% 87.4%
4961329 2003.1.3.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.50 41.0 2.83e-01 91.4% 51.2%