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LC768491.1__BEH88507.1__X__00013
Bact-VirLC768491.1__BEH88507.1__X__00013
Identity
- Accession:
- LC768491 ↗
- Kingdom:
- phage
Quality
82.1
mean pLDDT
Taxonomy
TaxID: 2979978
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 29-39_122-229
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.52 | 32.0 | 3.49e-01 | 100.0% | 74.7% |
| 1ok8A03 | 3.30.387.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 3 › Viral Envelope Glycoprotein, domain 3 | 0.50 | 26.0 | 3.05e-01 | 96.6% | 70.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3923782 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.66 | 30.0 | 3.64e-01 | 100.0% | 63.7% |
| 3225114 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 31.0 | 2.90e-01 | 99.2% | 40.7% |
| 3827784 | 304.4.1.64 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › zf-CCHC_4 | 0.51 | 34.0 | 3.69e-01 | 95.8% | 81.0% |
| 3303909 | 304.9.1.57 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › zf-CCHC_4 | 0.50 | 34.0 | 3.78e-01 | 95.8% | 87.4% |
D2
medium
residues 40-121
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.60 | 51.0 | 4.19e-01 | 96.3% | 78.3% |
| 2fekA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 44.0 | 3.62e-01 | 79.3% | 97.3% |
| 7dwqL01 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.54 | 46.0 | 3.98e-01 | 92.7% | 84.8% |
| 2r5uC00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.54 | 45.0 | 3.81e-01 | 91.5% | 89.9% |
| 2f96A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 41.0 | 3.12e-01 | 81.7% | 96.5% |
| 1lqtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.30e-01 | 92.7% | 73.4% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.51 | 41.0 | 3.66e-01 | 100.0% | 61.6% |
| 2p3yA02 | 1.10.3360.10 | Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain | 0.51 | 42.0 | 3.83e-01 | 89.0% | 96.3% |
| 1wljA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 40.0 | 3.29e-01 | 90.2% | 98.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4997092 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.68 | 40.0 | 4.35e-01 | 84.1% | 70.0% |
| 5032641 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.59 | 45.0 | 4.07e-01 | 81.7% | 80.0% |
| 3507850 | 109.4.1.526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc | 0.54 | 37.0 | 2.83e-01 | 72.0% | 70.0% |
| 4935180 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.54 | 45.0 | 4.23e-01 | 92.7% | 75.0% |
| 3173138 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.54 | 39.0 | 3.86e-01 | 84.1% | 71.1% |
| 4864324 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.51 | 36.0 | 3.11e-01 | 73.2% | 64.7% |
| 3176813 | 148.1.1.74 ↗ | alpha arrays › Histone-like › Histone-related › Histone › PF29498 | 0.51 | 35.0 | 3.15e-01 | 72.0% | 85.6% |
| 3867807 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.51 | 41.0 | 3.19e-01 | 90.2% | 87.9% |
| 4295379 | 195.1.1.1 ↗ | alpha complex topology › NusB-like › NusB-like › NusB-like › NusB | 0.51 | 37.0 | 3.18e-01 | 81.7% | 82.7% |
| 5014572 | 2.21.1.3 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 | 0.51 | 45.0 | 3.58e-01 | 98.8% | 57.6% |
| 4517656 | 109.4.1.526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc | 0.50 | 39.0 | 2.82e-01 | 85.4% | 45.6% |