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LC768498.2__BEI45448.1__phiKp30_180__00018

Bact-Vir

LC768498.2__BEI45448.1__phiKp30_180__00018

Identity

Accession:
LC768498 ↗
Kingdom:
phage

Quality

71.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lederbergvirus› Klebsiella_phage_phiKp_30

TaxID: 2979984

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-117
PDB
Domain cluster: rep: NC_013599.1__YP_003344925.1__Xfas53_gene35__00035__D4-118
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11650.15 best P22_Tail-4 109.6 2.40e-31 99.1% 67.3%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vt0k00 1.10.3230.20 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › P22 tail accessory factor (Gp4) 0.92 83.0 7.52e-01 100.0% 73.1%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 37.0 4.39e-01 88.5% 89.0%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 43.0 4.50e-01 97.3% 84.5%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 43.0 4.32e-01 97.3% 77.2%
2paqA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 45.0 3.95e-01 86.7% 84.2%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 35.0 4.25e-01 95.6% 98.6%
3fggA00 1.10.3950.10 Mainly Alpha › Orthogonal Bundle › putative ecf-type sigma factor negative effector from bacillus cereus › putative ecf-type sigma factor negative effector from bacillus cereus 0.56 43.0 3.98e-01 90.3% 62.6%
4bopB00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 45.0 4.10e-01 95.6% 64.7%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 45.0 4.18e-01 85.0% 90.0%
2nrlA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 44.0 4.08e-01 85.0% 87.6%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 35.0 3.92e-01 90.3% 85.5%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 35.0 4.05e-01 88.5% 91.1%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.55 28.0 3.53e-01 92.0% 85.5%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 39.0 3.81e-01 77.0% 87.0%
4yozA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 46.0 3.95e-01 93.8% 61.7%
1wnvB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.53 39.0 3.22e-01 76.1% 91.0%
2olpA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 4.13e-01 93.8% 90.7%
2wa5A01 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.53 33.0 3.49e-01 92.0% 68.6%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 35.0 3.49e-01 100.0% 67.5%
3uorB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 36.0 2.99e-01 74.3% 75.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1429455 4275.1.1.4 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › P22_Tail-4 0.92 84.0 7.56e-01 100.0% 73.3%
3108018 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.92 88.0 7.81e-01 100.0% 74.3%
4930737 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.64 35.0 3.21e-01 93.8% 42.1%
3876932 592.3.1.8 ↗ alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › PF31020 0.58 41.0 4.28e-01 73.5% 100.0%
3478383 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.57 42.0 3.91e-01 97.3% 60.7%
3756218 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 42.0 3.06e-01 79.6% 83.1%
3962352 192.29.1.146 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF2231 0.55 38.0 3.43e-01 70.8% 62.7%
3400498 105.1.1.1 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH 0.55 28.0 2.81e-01 81.4% 45.8%
3261516 109.4.1.297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_EMC2 0.54 39.0 2.79e-01 100.0% 27.5%
3219325 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.52 41.0 3.74e-01 85.0% 81.0%
3574952 604.28.1.0 ↗ alpha bundles › Spectrin repeat-like › E3 ubiquitin-protein ligase SHPRH second helical domain › E3 ubiquitin-protein ligase SHPRH second helical domain 0.52 44.0 3.59e-01 92.9% 74.9%
3527769 109.25.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.50 35.0 3.52e-01 100.0% 70.4%