←Back to structures
LC768500.1__BEH89655.1__X__00031
Bact-VirLC768500.1__BEH89655.1__X__00031
Identity
- Accession:
- LC768500 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 72-159
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 39.0 | 4.49e-01 | 89.8% | 79.4% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 37.0 | 4.24e-01 | 94.3% | 77.8% |
| 2rrfA00 | 2.30.29.160 | Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal | 0.62 | 49.0 | 4.24e-01 | 87.5% | 66.7% |
| 2i5hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 42.0 | 4.60e-01 | 94.3% | 93.1% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 40.0 | 4.49e-01 | 95.5% | 94.2% |
| 1qwdB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 45.0 | 3.70e-01 | 89.8% | 74.1% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 4.09e-01 | 90.9% | 90.9% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 4.20e-01 | 95.5% | 93.8% |
| 4apxB01 | 2.60.40.3430 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 37.0 | 3.36e-01 | 70.5% | 85.8% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 35.0 | 3.56e-01 | 72.7% | 67.8% |
| 2pn5A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 36.0 | 3.45e-01 | 70.5% | 92.4% |
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.35e-01 | 70.5% | 86.5% |
| 3eb7A03 | 2.100.10.10 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain | 0.53 | 43.0 | 3.35e-01 | 88.6% | 52.3% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.53 | 31.0 | 2.58e-01 | 81.8% | 31.3% |
| 3v98A03 | 3.10.450.60 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 33.0 | 3.07e-01 | 77.3% | 48.3% |
| 7pkwA01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 34.0 | 3.27e-01 | 100.0% | 56.3% |
| 3l4rA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 41.0 | 3.45e-01 | 85.2% | 63.6% |
| 7csoA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 41.0 | 3.61e-01 | 85.2% | 81.1% |
| 2b39A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.16e-01 | 70.5% | 90.4% |
| 2nlkA02 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.51 | 36.0 | 2.59e-01 | 72.7% | 46.5% |
| 3qjhA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.30e-01 | 70.5% | 94.4% |
| 3rleA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 42.0 | 3.98e-01 | 89.8% | 77.9% |
| 4h40A02 | 2.60.40.3740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 3.81e-01 | 97.7% | 90.1% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.90e-01 | 96.6% | 100.0% |
| 3pgbA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 35.0 | 3.27e-01 | 73.9% | 64.3% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 3.47e-01 | 88.6% | 83.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4028885 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.68 | 39.0 | 4.53e-01 | 89.8% | 78.5% |
| 4292289 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 39.0 | 4.41e-01 | 89.8% | 76.9% |
| 3948467 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 39.0 | 4.44e-01 | 94.3% | 78.5% |
| 4038269 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.66 | 38.0 | 4.32e-01 | 89.8% | 76.9% |
| 4950397 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 40.0 | 4.92e-01 | 92.0% | 98.2% |
| 4076295 | 375.1.1.88 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ogr_Delta | 0.65 | 37.0 | 4.50e-01 | 70.5% | 89.1% |
| 3287981 | 2.1.1.94 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C | 0.63 | 48.0 | 5.10e-01 | 95.5% | 94.7% |
| 4524363 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.58 | 38.0 | 4.31e-01 | 95.5% | 90.8% |
| 3483489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 38.0 | 4.14e-01 | 92.0% | 82.7% |
| 3655399 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 45.0 | 4.03e-01 | 97.7% | 61.6% |
| 3666058 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.55 | 46.0 | 4.50e-01 | 93.2% | 83.2% |
| 5026424 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 43.0 | 4.21e-01 | 93.2% | 77.9% |
| 3789346 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 40.0 | 3.75e-01 | 94.3% | 61.9% |
| 3407007 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 43.0 | 3.58e-01 | 89.8% | 77.6% |
| 4023095 | 3385.1.1.0 ↗ | beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 | 0.54 | 43.0 | 3.78e-01 | 88.6% | 91.1% |
| None | — | 0.54 | 38.0 | 2.62e-01 | 73.9% | 49.2% | |
| 4051625 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.54 | 37.0 | 4.16e-01 | 96.6% | 96.9% |
| 3824401 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 46.0 | 4.10e-01 | 94.3% | 74.0% |
| 4003604 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 43.0 | 4.12e-01 | 88.6% | 83.8% |
| 3558388 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.53 | 36.0 | 4.10e-01 | 76.1% | 93.8% |
| 3445272 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 40.0 | 2.68e-01 | 81.8% | 54.1% |
| 3271375 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 46.0 | 3.60e-01 | 95.5% | 59.4% |
| 3472486 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 43.0 | 3.73e-01 | 90.9% | 96.4% |
| 3995204 | 295.1.1.4 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain | 0.52 | 33.0 | 3.71e-01 | 76.1% | 86.2% |
| 3472467 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.51 | 38.0 | 4.04e-01 | 93.2% | 92.0% |
| 3594465 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 28.0 | 3.30e-01 | 71.6% | 80.0% |
| 3931897 | 69.1.2.1 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH | 0.51 | 44.0 | 3.90e-01 | 94.3% | 99.2% |
| 169663 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.50 | 40.0 | 3.38e-01 | 88.6% | 76.4% |
D2
medium
residues 191-287_384-400
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.65 | 55.0 | 5.34e-01 | 88.6% | 88.7% |
| 1vwxH02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.58 | 35.0 | 3.65e-01 | 86.8% | 64.1% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 32.0 | 3.60e-01 | 92.1% | 75.6% |
| 1vw4F02 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.55 | 29.0 | 3.21e-01 | 85.1% | 60.9% |
| 2o30A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 33.0 | 3.75e-01 | 91.2% | 85.4% |
| 4rsvA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.08e-01 | 92.1% | 63.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030042 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.66 | 56.0 | 5.36e-01 | 91.2% | 100.0% |
| 3786933 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.66 | 55.0 | 5.34e-01 | 88.6% | 100.0% |
| 4682340 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.66 | 55.0 | 5.35e-01 | 89.5% | 100.0% |
| 184471 | 1.1.13.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st | 0.61 | 33.0 | 3.84e-01 | 86.0% | 72.1% |
| 4328537 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.53 | 33.0 | 3.70e-01 | 93.0% | 82.4% |
| 4930246 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 37.0 | 3.45e-01 | 89.5% | 60.0% |
D3
medium
residues 288-383
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5yixA00 | 1.10.601.10 | Mainly Alpha › Orthogonal Bundle › RNA Polymerase Primary Sigma Factor › RNA Polymerase Primary Sigma Factor | 0.55 | 48.0 | 3.33e-01 | 95.8% | 88.6% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 40.0 | 3.84e-01 | 80.2% | 99.1% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 41.0 | 3.91e-01 | 86.5% | 72.5% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3348202 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.66 | 45.0 | 3.44e-01 | 70.8% | 72.4% |
| 4026309 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.63 | 43.0 | 2.95e-01 | 71.9% | 52.3% |
| 3211543 | 109.4.1.1839 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Otopetrin | 0.55 | 46.0 | 3.55e-01 | 92.7% | 75.9% |