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LC768500.1__BEH89756.1__X__00132

Bact-Vir

LC768500.1__BEH89756.1__X__00132

Identity

Accession:
LC768500 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_phiKp_32

TaxID: 2979986

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-61
PDB
Domain cluster: rep: ON602759.1__UVX31607.1__S13e_00021__00021__D17-71
D2 high residues 416-504
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.76 67.0 6.74e-01 100.0% 95.5%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 63.0 6.30e-01 100.0% 98.9%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 63.0 6.27e-01 100.0% 98.9%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 63.0 5.93e-01 100.0% 86.2%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 59.0 6.08e-01 94.4% 98.8%
1hf2A02 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 52.0 4.98e-01 100.0% 74.5%
3abgB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.62 48.0 4.05e-01 85.4% 84.0%
5l77A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 43.0 3.84e-01 86.5% 97.0%
2ux6A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.52 39.0 3.62e-01 83.1% 60.7%
3h11A00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 42.0 3.22e-01 92.1% 88.7%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.76 67.0 6.81e-01 100.0% 97.7%
185692 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.70 63.0 5.93e-01 100.0% 86.2%
4561709 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.68 60.0 6.06e-01 100.0% 98.9%
5030451 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 49.0 4.64e-01 77.5% 90.5%
7233 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.65 52.0 4.95e-01 100.0% 73.8%
3982197 207.2.1.25 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA 0.61 54.0 3.49e-01 98.9% 22.0%
4663567 207.6.1.12 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Ice_nucleation 0.61 49.0 2.99e-01 100.0% 13.2%
3575229 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.61 47.0 4.09e-01 84.3% 70.7%
2775473 12.6.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Glyco_hydro_95_C 0.60 52.0 5.33e-01 96.6% 100.0%
3942383 520.2.1.0 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE 0.57 49.0 4.92e-01 94.4% 97.8%
5028240 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 50.0 4.41e-01 96.6% 70.8%
5077502 2003.6.1.4 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › ADP_PFK_GK 0.56 41.0 2.63e-01 78.7% 27.4%
3548841 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.52 47.0 3.30e-01 100.0% 46.3%
3605629 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.52 36.0 2.88e-01 70.8% 68.7%
5034581 207.2.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.51 45.0 3.01e-01 100.0% 25.9%
3471039 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 3.27e-01 95.5% 62.8%
D3 medium residues 80-183
PDB
D4 medium residues 190-269
PDB
Domain cluster: rep: MG592608.1__AUR97676.1__NVP1243O_53__00053__D278-351