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LC776701.1__BEQ12893.1__Ep4_034__00034

Bact-Vir

LC776701.1__BEQ12893.1__Ep4_034__00034

Identity

Accession:
LC776701 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Actinidiaevirus› Pseudomonas_phage_Ep4

TaxID: 3057492

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-28_137-254
PDB
Domain cluster: rep: MH892367.1__AYP29671.1__SW19_003__00003__D18-50_130-248
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12236.15 best Head-tail_con 34.9 8.90e-09 98.6% 28.0%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.71 26.0 4.02e-01 76.7% 80.6%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 26.0 3.94e-01 74.0% 91.7%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.63 27.0 3.51e-01 89.0% 67.8%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 35.0 3.69e-01 71.2% 66.9%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 32.0 3.24e-01 88.4% 57.6%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 37.0 3.61e-01 71.2% 91.5%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.52 37.0 2.89e-01 74.0% 55.7%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.67e-01 71.2% 78.5%
1e50B00 2.40.250.10 Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit 0.51 34.0 3.63e-01 88.4% 75.4%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 38.0 3.16e-01 78.1% 82.5%
5kkuD00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.51 41.0 3.38e-01 87.0% 54.6%
6xrbA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 31.0 3.21e-01 89.0% 63.3%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.51 36.0 2.41e-01 73.3% 92.4%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 36.0 2.69e-01 71.9% 50.7%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.50 39.0 3.30e-01 80.8% 64.0%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 41.0 3.33e-01 86.3% 51.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3076016 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.96 75.0 8.46e-01 84.9% 100.0%
2537708 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.84 69.0 7.25e-01 84.9% 94.7%
3110784 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.83 63.0 7.00e-01 84.9% 95.0%
3026414 4056.1.1.4 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con 0.76 62.0 6.64e-01 84.9% 100.0%
3588750 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.61 31.0 4.21e-01 80.8% 96.0%
3218632 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.59 33.0 4.07e-01 77.4% 85.1%
3536447 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.58 30.0 3.05e-01 90.4% 49.0%
849 9.1.1.16 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 47.0 3.54e-01 91.1% 60.7%
3615838 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.55 33.0 3.47e-01 88.4% 65.2%
4354418 9.1.1.16 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 47.0 3.00e-01 92.5% 30.9%
3261868 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 41.0 3.88e-01 81.5% 93.3%
3739321 216.1.1.2 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.53 37.0 3.51e-01 72.6% 90.5%
3598820 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.50 36.0 2.90e-01 74.0% 44.0%
3394711 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.50 31.0 3.08e-01 91.8% 56.9%
D2 medium residues 29-136
PDB
Domain cluster: rep: ON864052.1__UTQ72400.1__vBVpPAC2_26__00026__D1-78
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12236.15 best Head-tail_con 46.9 2.00e-12 100.0% 19.2%
D3 medium residues 256-344
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 55.0 5.85e-01 98.9% 98.7%
2qj8A00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.65 33.0 2.23e-01 96.6% 13.1%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 50.0 4.84e-01 100.0% 75.5%
1e9fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 37.0 2.83e-01 95.5% 24.8%
1yf2A02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.63 58.0 5.44e-01 100.0% 87.9%
3k4hA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 26.0 2.18e-01 94.4% 23.9%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.61 47.0 5.05e-01 93.3% 97.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044500 2007.1.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.64 26.0 2.33e-01 86.5% 24.8%
4676609 4038.1.1.10 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Portal_Mu 0.61 55.0 3.79e-01 100.0% 54.4%
3582998 192.2.1.34 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › CpG_bind_C 0.56 52.0 4.70e-01 100.0% 77.5%
4024536 523.1.1.0 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain 0.52 37.0 3.71e-01 75.3% 90.5%
4162292 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.51 40.0 2.92e-01 86.5% 96.7%
4678236 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.50 43.0 3.45e-01 93.3% 94.9%
3613445 7563.1.1.2 ↗ a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related › Lysine_decarbox 0.50 42.0 3.04e-01 100.0% 31.1%