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LC778250.1__BES53398.1__X__00053

Bact-Vir

LC778250.1__BES53398.1__X__00053

Identity

Accession:
LC778250 ↗
Kingdom:
phage

Quality

90.2 mean pLDDT

Taxonomy

Aeromonas_phage_phiWae15

TaxID: 3063960

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-82
PDB
Domain cluster: rep: NC_070887.1__YP_010662186.1__PP938_gp036__00036__D12-84
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 44.0 3.81e-01 100.0% 44.9%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 40.0 4.02e-01 100.0% 58.5%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.65 41.0 3.44e-01 100.0% 37.9%
8afoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 38.0 3.74e-01 100.0% 52.3%
1va9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 42.0 3.62e-01 100.0% 42.6%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.59 40.0 4.37e-01 98.7% 87.3%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 41.0 3.41e-01 75.6% 77.1%
3nziA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 38.0 3.46e-01 100.0% 51.9%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.56 38.0 3.56e-01 100.0% 57.3%
4iihB04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.96e-01 97.4% 63.6%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 37.0 3.37e-01 100.0% 51.9%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 38.0 3.25e-01 75.6% 81.2%
1neuA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.75e-01 100.0% 60.9%
5eliA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.57e-01 85.9% 57.1%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.55e-01 100.0% 53.7%
1hkfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.34e-01 85.9% 54.6%
5edxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.57e-01 100.0% 59.6%
2qg3A00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.51 44.0 3.38e-01 100.0% 67.5%
5eufA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 44.0 3.21e-01 97.4% 77.5%
6a48A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 35.0 2.92e-01 100.0% 38.4%
7nitA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.76e-01 100.0% 62.6%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583230 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.68 43.0 4.64e-01 100.0% 76.9%
4982909 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.68 44.0 3.34e-01 100.0% 27.5%
3396410 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.67 44.0 3.36e-01 100.0% 30.3%
4942891 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 44.0 3.97e-01 100.0% 52.4%
5033521 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.64 42.0 3.22e-01 100.0% 28.1%
3226640 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 45.0 4.17e-01 100.0% 57.6%
1556 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.64 42.0 3.76e-01 100.0% 47.7%
4028489 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.64 46.0 3.93e-01 76.9% 88.5%
3396396 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.63 42.0 3.05e-01 100.0% 25.1%
4962335 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.61 41.0 4.39e-01 100.0% 83.1%
199962 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.59 40.0 4.37e-01 98.7% 87.3%
4032409 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 44.0 4.56e-01 100.0% 82.7%
3505636 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.59 42.0 3.62e-01 100.0% 48.3%
5033996 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 43.0 3.05e-01 100.0% 25.3%
3252089 4139.1.1.1 ↗ a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 0.58 47.0 4.06e-01 100.0% 56.0%
5018083 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 3.47e-01 100.0% 36.7%
3748555 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.57 38.0 3.38e-01 100.0% 46.1%
3533957 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.57 38.0 3.17e-01 100.0% 36.6%
3661827 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 44.0 3.57e-01 100.0% 42.6%
3895961 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 48.0 3.93e-01 98.7% 85.2%
3267716 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.56 48.0 4.13e-01 98.7% 97.7%
5039023 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.56 40.0 3.59e-01 98.7% 53.6%
3490050 11.2.1.8 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 0.56 39.0 3.29e-01 100.0% 42.5%
3898135 10.2.1.5 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.56 40.0 3.11e-01 100.0% 32.1%
3488824 11.2.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 0.55 48.0 3.18e-01 100.0% 31.9%
3894462 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.55 38.0 3.06e-01 100.0% 35.6%
3774000 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 45.0 3.57e-01 96.2% 76.6%
3249076 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.26e-01 98.7% 42.8%
4486357 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.53 45.0 4.08e-01 97.4% 76.4%
2845396 11.1.1.182 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like 0.53 45.0 3.67e-01 98.7% 51.8%
3773781 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 41.0 3.49e-01 100.0% 49.0%
4932386 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.52 45.0 3.42e-01 98.7% 71.3%
4018427 10.9.1.0 ↗ beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin 0.52 41.0 3.92e-01 100.0% 72.6%
2324017 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.52 44.0 3.90e-01 98.7% 73.0%
3598717 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 38.0 3.36e-01 100.0% 51.7%
5055940 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.52 44.0 3.43e-01 98.7% 69.2%
164972 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.51 44.0 3.37e-01 100.0% 67.2%
2559772 3019.1.1.0 ↗ beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.51 43.0 3.81e-01 98.7% 82.6%
4029432 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.51 44.0 3.14e-01 98.7% 54.2%
4935326 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.51 44.0 3.31e-01 100.0% 64.9%
5043482 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.51 43.0 3.36e-01 100.0% 71.1%
3832908 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 35.0 2.81e-01 100.0% 34.1%