Back to structures

LC778250.1__BES53409.1__X__00064

Bact-Vir

LC778250.1__BES53409.1__X__00064

Identity

Accession:
LC778250 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Taxonomy

TaxID: 3063960

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-111
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lkfA00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.70 43.0 2.99e-01 72.8% 19.5%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.69 46.0 4.72e-01 78.3% 71.3%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.68 42.0 2.97e-01 75.0% 20.1%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 48.0 4.57e-01 80.4% 83.6%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.22e-01 84.8% 62.4%
2xsgB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 51.0 3.59e-01 90.2% 40.4%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 50.0 4.31e-01 89.1% 66.0%
3mg1B02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.44e-01 90.2% 65.6%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.59 43.0 4.37e-01 100.0% 76.9%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.59 43.0 3.44e-01 77.2% 59.2%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.59 41.0 4.40e-01 88.0% 84.6%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 4.32e-01 90.2% 65.6%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 46.0 4.51e-01 83.7% 85.9%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.58 42.0 3.50e-01 77.2% 47.3%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.20e-01 89.1% 72.0%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.27e-01 89.1% 67.2%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 42.0 2.86e-01 78.3% 20.7%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 4.18e-01 91.3% 66.9%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.57 45.0 4.28e-01 85.9% 82.6%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.56 39.0 3.34e-01 72.8% 55.8%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 4.20e-01 90.2% 67.2%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 4.11e-01 89.1% 65.4%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 4.27e-01 98.9% 70.9%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 4.24e-01 90.2% 70.8%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.09e-01 90.2% 63.6%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 3.92e-01 90.2% 62.8%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.07e-01 90.2% 71.0%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 4.04e-01 90.2% 64.2%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 44.0 3.97e-01 89.1% 66.4%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.54e-01 73.9% 84.7%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.59e-01 84.8% 58.5%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 41.0 3.82e-01 81.5% 100.0%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.73e-01 87.0% 60.8%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 45.0 4.03e-01 91.3% 67.9%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 3.93e-01 100.0% 68.3%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.54 49.0 4.38e-01 98.9% 97.6%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.85e-01 89.1% 66.9%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 4.10e-01 90.2% 70.3%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 4.08e-01 100.0% 71.4%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 34.0 3.02e-01 70.7% 44.4%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.94e-01 91.3% 67.7%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 47.0 2.99e-01 100.0% 81.9%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.79e-01 90.2% 69.0%
3p2nB02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 46.0 3.11e-01 97.8% 77.1%
5vawA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.52 37.0 3.47e-01 75.0% 96.6%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.72e-01 89.1% 65.4%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 45.0 3.89e-01 100.0% 67.6%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.84e-01 88.0% 71.9%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.97e-01 100.0% 72.7%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.46e-01 88.0% 87.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034706 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 41.0 4.49e-01 76.1% 76.0%
3500010 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 45.0 3.33e-01 70.7% 34.0%
5040972 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 42.0 4.59e-01 76.1% 80.0%
3254995 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 42.0 2.65e-01 76.1% 12.6%
3459363 243.3.1.74 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF1668 0.65 48.0 5.07e-01 78.3% 92.9%
3933099 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.64 44.0 4.57e-01 76.1% 76.5%
3935161 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 47.0 4.54e-01 79.3% 67.6%
3821607 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 44.0 2.94e-01 72.8% 26.1%
3597660 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 45.0 2.93e-01 78.3% 17.7%
3170490 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.60 47.0 3.50e-01 83.7% 46.1%
3289158 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 47.0 4.45e-01 83.7% 88.2%
3307679 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.59 48.0 4.23e-01 90.2% 61.4%
3715923 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.59 49.0 3.19e-01 94.6% 20.2%
3461988 5.1.3.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.58 53.0 3.52e-01 98.9% 95.7%
4315252 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.58 48.0 4.18e-01 91.3% 64.1%
3465496 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.58 53.0 4.62e-01 100.0% 97.1%
3930653 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.58 43.0 4.37e-01 87.0% 80.0%
3453643 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.58 48.0 4.13e-01 90.2% 60.7%
1108903 3667.1.1.1 a+b two layers › LEE-encoded effector EspG C-terminal domain-related › LEE-encoded effector EspG C-terminal domain-related › LEE-encoded effector EspG C-terminal domain-related › EspG 0.58 52.0 3.78e-01 100.0% 98.0%
4019136 708.1.1.10 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › SWI-SNF_Ssr4_N 0.58 52.0 4.18e-01 100.0% 70.0%
4003671 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.57 52.0 4.18e-01 100.0% 86.9%
3996943 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.57 45.0 3.89e-01 84.8% 59.3%
3967771 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 44.0 3.97e-01 84.8% 86.2%
3739762 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 45.0 4.11e-01 85.9% 97.5%
4561192 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 39.0 4.18e-01 83.7% 85.0%
3432106 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.56 44.0 4.02e-01 88.0% 63.1%
6408 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.56 45.0 3.90e-01 89.1% 62.4%
3710733 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.56 46.0 4.22e-01 90.2% 70.8%
3732871 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.56 45.0 3.67e-01 89.1% 60.1%
3203519 243.1.1.44 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MBA1 0.56 51.0 3.89e-01 100.0% 95.1%
3961157 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.55 45.0 4.15e-01 90.2% 72.5%
3669361 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 50.0 4.08e-01 100.0% 90.6%
3389979 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 45.0 4.17e-01 90.2% 75.0%
3297404 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.55 46.0 3.98e-01 90.2% 72.9%
3840054 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.55 41.0 3.62e-01 80.4% 81.4%
6390 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.55 44.0 4.09e-01 88.0% 71.4%
1278471 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.55 43.0 4.02e-01 84.8% 73.7%
3679520 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 50.0 4.22e-01 100.0% 90.7%
3970009 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 48.0 3.98e-01 100.0% 64.5%
4608992 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.54 47.0 4.01e-01 100.0% 70.3%
3286088 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.54 44.0 4.07e-01 90.2% 70.0%
4283272 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.54 47.0 3.92e-01 100.0% 63.5%
4018022 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.53 44.0 4.07e-01 90.2% 95.8%
3807674 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.53 41.0 3.07e-01 82.6% 42.1%
3192104 3385.1.1.0 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.53 43.0 3.87e-01 88.0% 100.0%
4999715 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.52 45.0 4.10e-01 96.7% 70.4%
4097328 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.52 37.0 3.46e-01 75.0% 73.6%
3809120 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.52 47.0 4.18e-01 100.0% 83.8%
4373837 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.52 40.0 3.60e-01 85.9% 67.9%
4865157 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.52 37.0 3.54e-01 82.6% 62.1%
3262201 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 40.0 3.55e-01 87.0% 59.3%
3731745 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.51 41.0 3.52e-01 90.2% 59.4%
170212 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.51 43.0 3.97e-01 100.0% 72.7%
4966638 881.1.1.44 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF6517 0.51 45.0 3.57e-01 100.0% 77.9%