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LC778449.1__BES79668.1__X__00032
Bact-VirLC778449.1__BES79668.1__X__00032
Identity
- Accession:
- LC778449 ↗
- Kingdom:
- phage
Quality
82.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autoscriptoviridae›
Bonnellvirus›
Cronobacter_phage_RZ4
TaxID: 3074122
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-94
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 48.0 | 5.57e-01 | 75.0% | 81.7% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 50.0 | 5.93e-01 | 77.4% | 91.2% |
| 1m1gB03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 48.0 | 5.48e-01 | 75.0% | 79.4% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 47.0 | 5.33e-01 | 76.2% | 82.3% |
| 1igqB00 | 2.30.30.150 | Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain | 0.76 | 43.0 | 5.13e-01 | 77.4% | 82.5% |
| 2eqmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 46.0 | 5.57e-01 | 75.0% | 98.1% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.75 | 42.0 | 5.37e-01 | 71.4% | 100.0% |
| 2egcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 51.0 | 5.39e-01 | 98.8% | 85.3% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.70 | 45.0 | 4.91e-01 | 77.4% | 82.1% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 46.0 | 4.90e-01 | 100.0% | 83.3% |
| 3pmiA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 42.0 | 4.74e-01 | 98.8% | 84.6% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 33.0 | 4.20e-01 | 77.4% | 88.9% |
| 4z48A00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.64 | 44.0 | 3.19e-01 | 71.4% | 70.4% |
| 2kxcA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 45.0 | 4.90e-01 | 100.0% | 91.0% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 45.0 | 4.79e-01 | 100.0% | 84.9% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 3.70e-01 | 79.8% | 41.7% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 36.0 | 4.07e-01 | 84.5% | 82.0% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 36.0 | 3.99e-01 | 90.5% | 79.1% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.57 | 38.0 | 4.14e-01 | 85.7% | 86.4% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 49.0 | 4.25e-01 | 97.6% | 70.5% |
| 6l4qB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 37.0 | 3.17e-01 | 70.2% | 80.0% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 40.0 | 3.69e-01 | 79.8% | 81.1% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 39.0 | 3.40e-01 | 76.2% | 93.7% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 38.0 | 3.37e-01 | 77.4% | 93.3% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.53 | 40.0 | 3.67e-01 | 81.0% | 73.5% |
| 3g1jA00 | 2.30.30.350 | Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. | 0.52 | 45.0 | 4.41e-01 | 96.4% | 90.0% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 38.0 | 3.38e-01 | 77.4% | 96.0% |
| 2kjpA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 36.0 | 3.69e-01 | 72.6% | 98.7% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.51 | 30.0 | 2.98e-01 | 78.6% | 50.5% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3976834 | 4.1.1.156 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2158 | 0.89 | 46.0 | 6.00e-01 | 73.8% | 88.0% |
| 4101502 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.86 | 49.0 | 6.06e-01 | 75.0% | 88.9% |
| 4059465 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.85 | 51.0 | 5.67e-01 | 76.2% | 75.0% |
| 3440094 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.84 | 51.0 | 5.99e-01 | 77.4% | 86.7% |
| 4177200 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.83 | 49.0 | 5.99e-01 | 100.0% | 90.9% |
| 3296864 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.83 | 46.0 | 5.44e-01 | 77.4% | 78.3% |
| 5036498 | 4.1.1.3 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW | 0.82 | 50.0 | 5.30e-01 | 77.4% | 69.3% |
| 3941391 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.81 | 44.0 | 5.15e-01 | 71.4% | 75.0% |
| 5001589 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.80 | 57.0 | 5.38e-01 | 79.8% | 62.0% |
| 3416068 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.80 | 51.0 | 4.05e-01 | 76.2% | 34.8% |
| 3370389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 54.0 | 6.06e-01 | 76.2% | 90.8% |
| 5051313 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 51.0 | 5.70e-01 | 77.4% | 84.6% |
| 3328489 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 50.0 | 5.49e-01 | 100.0% | 78.6% |
| 5011500 | 4.1.1.14 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e | 0.78 | 55.0 | 5.16e-01 | 78.6% | 61.0% |
| 4946972 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 52.0 | 5.06e-01 | 73.8% | 63.3% |
| 4141828 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.78 | 53.0 | 5.68e-01 | 95.2% | 81.1% |
| 4168737 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 51.0 | 5.44e-01 | 95.2% | 81.1% |
| 3770803 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.72 | 52.0 | 4.78e-01 | 79.8% | 58.2% |
| 3842363 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.72 | 52.0 | 4.77e-01 | 79.8% | 58.2% |
| 3898370 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.71 | 48.0 | 5.61e-01 | 75.0% | 100.0% |
| 4959982 | 3110.1.1.0 ↗ | a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain | 0.68 | 38.0 | 2.83e-01 | 72.6% | 22.4% |
| 4012002 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 48.0 | 5.17e-01 | 78.6% | 90.0% |
| 3684646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 5.23e-01 | 96.4% | 85.0% |
| 5006353 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.63 | 37.0 | 3.47e-01 | 88.1% | 45.7% |
| 4306285 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 46.0 | 4.92e-01 | 100.0% | 92.9% |
| 4380562 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.62 | 53.0 | 4.13e-01 | 98.8% | 60.5% |
| 4478612 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.62 | 38.0 | 3.41e-01 | 94.0% | 42.5% |
| 4965423 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.58 | 37.0 | 3.29e-01 | 92.9% | 43.2% |
| 3561132 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.57 | 41.0 | 2.45e-01 | 75.0% | 36.9% |
| 4434271 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.57 | 39.0 | 3.46e-01 | 94.0% | 48.0% |
| 3518287 | 4.1.1.347 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 | 0.57 | 52.0 | 4.66e-01 | 98.8% | 93.0% |
| None | — | 0.57 | 40.0 | 3.26e-01 | 75.0% | 93.5% | |
| 4994295 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.57 | 36.0 | 3.19e-01 | 94.0% | 41.4% |
| 3902875 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 37.0 | 4.13e-01 | 84.5% | 87.7% |
| 4110324 | 4.1.1.252 ↗ | beta barrels › SH3 › SH3 › SH3 › MdcG_N | 0.56 | 45.0 | 4.62e-01 | 95.2% | 93.8% |
| 3387994 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.55 | 37.0 | 3.81e-01 | 94.0% | 72.5% |
| 3470133 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.55 | 50.0 | 4.47e-01 | 98.8% | 77.2% |
| 3262159 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 39.0 | 3.33e-01 | 75.0% | 70.8% |
| 4486857 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 37.0 | 3.20e-01 | 72.6% | 69.6% |
| 3996907 | 2.1.1.27 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 | 0.51 | 41.0 | 3.65e-01 | 91.7% | 90.7% |
| 3899369 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.51 | 43.0 | 3.59e-01 | 95.2% | 66.7% |
D2
high
residues 114-198
Domain cluster:
rep: NC_024367.1__YP_009043737.1__HL13_gp57__00057__D23-100
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF18909.6 best | dGTP_diPhyd_N | 107.6 | 3.70e-31 | 100.0% | 79.8% |