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LC779065.1__BES79842.1__X__00069
Bact-VirLC779065.1__BES79842.1__X__00069
Identity
- Accession:
- LC779065 ↗
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Taxonomy
TaxID: 3074381
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-48
Domain cluster:
representative
CATH (51)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.80 | 66.0 | 3.86e-01 | 100.0% | 13.3% |
| 3kyaA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.79 | 66.0 | 3.80e-01 | 100.0% | 11.4% |
| 3rlfF03 | 2.40.430.10 | Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP | 0.77 | 65.0 | 5.03e-01 | 100.0% | 50.0% |
| 2de6A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.77 | 59.0 | 5.12e-01 | 100.0% | 55.2% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.74 | 53.0 | 3.88e-01 | 81.1% | 28.2% |
| 4ftxB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.73 | 59.0 | 4.20e-01 | 100.0% | 39.8% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.70 | 57.0 | 4.80e-01 | 100.0% | 59.2% |
| 1qw2A00 | 3.30.1980.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC | 0.70 | 58.0 | 4.34e-01 | 100.0% | 56.9% |
| 2lojA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.70 | 48.0 | 4.79e-01 | 73.0% | 66.7% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.69 | 56.0 | 3.45e-01 | 100.0% | 37.6% |
| 3gkeA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.68 | 56.0 | 3.95e-01 | 100.0% | 65.4% |
| 2eo6A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.68 | 56.0 | 4.15e-01 | 100.0% | 38.0% |
| 3pubA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.68 | 50.0 | 3.37e-01 | 86.5% | 47.2% |
| 3gceA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.68 | 57.0 | 4.19e-01 | 100.0% | 76.9% |
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.67 | 53.0 | 4.82e-01 | 100.0% | 70.7% |
| 6heiA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.67 | 52.0 | 3.14e-01 | 100.0% | 75.7% |
| 3imoC00 | 3.30.920.70 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › | 0.66 | 53.0 | 3.97e-01 | 100.0% | 36.4% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.66 | 54.0 | 4.25e-01 | 100.0% | 60.7% |
| 2vseA04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.66 | 51.0 | 3.60e-01 | 97.3% | 59.4% |
| 3d4eA01 | 3.30.1450.10 | Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › | 0.66 | 54.0 | 4.32e-01 | 100.0% | 47.6% |
| 1ekgA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.66 | 50.0 | 3.58e-01 | 100.0% | 27.7% |
| 1itxA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.65 | 47.0 | 3.91e-01 | 86.5% | 41.1% |
| 2zkmX01 | 2.30.29.240 | Mainly Beta › Roll › PH-domain like › | 0.65 | 50.0 | 3.29e-01 | 100.0% | 20.9% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.64 | 44.0 | 3.74e-01 | 73.0% | 39.7% |
| 1ygyB03 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.64 | 51.0 | 3.61e-01 | 100.0% | 31.7% |
| 4yg6B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 50.0 | 3.44e-01 | 100.0% | 42.3% |
| 2fggA01 | 3.30.160.240 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 | 0.63 | 48.0 | 4.06e-01 | 94.6% | 78.7% |
| 3kfvA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 50.0 | 3.86e-01 | 100.0% | 48.0% |
| 1bm8A00 | 3.10.260.10 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain | 0.63 | 46.0 | 3.53e-01 | 86.5% | 81.8% |
| 2xf4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.63 | 49.0 | 3.18e-01 | 100.0% | 19.0% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.62 | 45.0 | 2.79e-01 | 81.1% | 12.2% |
| 8f66A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 47.0 | 3.07e-01 | 100.0% | 93.3% |
| 2psmC01 | 2.20.28.230 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.61 | 43.0 | 3.99e-01 | 75.7% | 76.9% |
| 5ajqA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 46.0 | 3.87e-01 | 100.0% | 84.9% |
| 1ei5A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.61 | 49.0 | 2.97e-01 | 100.0% | 80.1% |
| 1kaxA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.61 | 45.0 | 4.12e-01 | 83.8% | 58.2% |
| 4c89C00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 46.0 | 2.74e-01 | 91.9% | 31.9% |
| 1l8rA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.60 | 47.0 | 3.63e-01 | 97.3% | 82.2% |
| 1tfkA00 | 3.10.450.200 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 47.0 | 3.77e-01 | 100.0% | 40.4% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.60 | 45.0 | 4.22e-01 | 91.9% | 75.9% |
| 6z46V01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.60 | 46.0 | 3.15e-01 | 100.0% | 46.7% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 43.0 | 3.96e-01 | 89.2% | 70.7% |
| 1d7bA00 | 2.60.40.1210 | Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain | 0.60 | 48.0 | 3.14e-01 | 100.0% | 21.6% |
| 1sbxA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.59 | 46.0 | 3.56e-01 | 100.0% | 78.3% |
| 4wfsA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 41.0 | 2.63e-01 | 81.1% | 14.0% |
| 2im9A02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.56 | 45.0 | 3.05e-01 | 86.5% | 21.8% |
| 1sjiA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 40.0 | 2.98e-01 | 89.2% | 83.9% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 3.86e-01 | 89.2% | 74.5% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 42.0 | 4.09e-01 | 100.0% | 78.7% |
| 1irxA02 | 2.30.30.300 | Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like | 0.51 | 34.0 | 3.43e-01 | 83.8% | 67.4% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.50 | 37.0 | 3.63e-01 | 81.1% | 81.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4890877 | 220.1.1.14 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom | 0.82 | 72.0 | 4.88e-01 | 100.0% | 36.1% |
| 3418892 | 5.1.8.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › DUF295 | 0.77 | 59.0 | 4.15e-01 | 86.5% | 53.9% |
| 3800040 | 5.1.4.422 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Rol-3 | 0.76 | 61.0 | 3.77e-01 | 100.0% | 15.6% |
| 5065441 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 55.0 | 4.98e-01 | 81.1% | 56.6% |
| 4857588 | 219.1.1.6 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 | 0.75 | 61.0 | 3.72e-01 | 100.0% | 14.7% |
| 3667795 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.74 | 60.0 | 3.99e-01 | 94.6% | 52.0% |
| 3705541 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.74 | 61.0 | 4.57e-01 | 100.0% | 42.0% |
| 3601907 | 5.1.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed | 0.73 | 59.0 | 3.85e-01 | 97.3% | 20.1% |
| 3809821 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.72 | 59.0 | 3.49e-01 | 100.0% | 83.7% |
| 4985368 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.72 | 59.0 | 5.16e-01 | 100.0% | 60.0% |
| 3817626 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.72 | 58.0 | 3.84e-01 | 100.0% | 32.8% |
| 3649955 | 6.1.1.12 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Agglutinin | 0.72 | 54.0 | 3.62e-01 | 89.2% | 51.2% |
| 3441677 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 50.0 | 4.60e-01 | 86.5% | 58.0% |
| 4961948 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.70 | 52.0 | 3.71e-01 | 83.8% | 28.3% |
| 3550970 | 719.1.1.5 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 | 0.68 | 54.0 | 4.09e-01 | 100.0% | 95.5% |
| 3928506 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.68 | 53.0 | 4.18e-01 | 89.2% | 40.0% |
| 3258610 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 56.0 | 4.43e-01 | 97.3% | 63.7% |
| 4999520 | 2008.1.1.44 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FokI_cleav_dom | 0.67 | 56.0 | 3.69e-01 | 100.0% | 34.7% |
| 3433500 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.67 | 50.0 | 4.73e-01 | 89.2% | 70.0% |
| 3453664 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.67 | 54.0 | 3.76e-01 | 100.0% | 62.0% |
| 3888996 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.66 | 53.0 | 4.12e-01 | 100.0% | 86.3% |
| 2487568 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.66 | 50.0 | 3.62e-01 | 100.0% | 28.0% |
| 5052895 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 43.0 | 3.89e-01 | 78.4% | 43.6% |
| 5041229 | 375.13.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain | 0.66 | 54.0 | 4.78e-01 | 100.0% | 61.7% |
| 4986717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 47.0 | 3.99e-01 | 78.4% | 83.1% |
| 3391302 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.65 | 55.0 | 3.30e-01 | 100.0% | 15.7% |
| 5051613 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.65 | 50.0 | 3.64e-01 | 91.9% | 39.0% |
| 3593875 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 45.0 | 4.01e-01 | 78.4% | 49.1% |
| 3476114 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.65 | 54.0 | 3.06e-01 | 97.3% | 9.9% |
| 3650304 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.64 | 48.0 | 4.24e-01 | 83.8% | 53.3% |
| 3269848 | 12.1.1.23 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central | 0.64 | 52.0 | 3.64e-01 | 100.0% | 97.8% |
| 3588147 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.64 | 52.0 | 3.00e-01 | 100.0% | 9.6% |
| 3189994 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.63 | 44.0 | 3.36e-01 | 78.4% | 30.0% |
| 3529465 | 101.1.9.4 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Ski_Sno | 0.63 | 50.0 | 3.80e-01 | 100.0% | 80.0% |
| 4402089 | 5.1.7.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 | 0.63 | 50.0 | 2.67e-01 | 100.0% | 3.5% |
| 3702975 | 3556.1.1.0 ↗ | a+b two layers › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 › Uncharacterized Protein Rru_A0810 | 0.62 | 50.0 | 3.91e-01 | 100.0% | 61.7% |
| 4928444 | 219.1.1.79 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core2 | 0.62 | 49.0 | 3.28e-01 | 94.6% | 21.8% |
| 3472428 | 4184.1.1.1 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 | 0.62 | 47.0 | 3.95e-01 | 100.0% | 45.0% |
| 3805766 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.60 | 46.0 | 4.24e-01 | 94.6% | 81.8% |
| 3413140 | 6129.1.1.1 ↗ | beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD | 0.59 | 49.0 | 3.19e-01 | 100.0% | 48.9% |
| 3325360 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 47.0 | 4.03e-01 | 100.0% | 68.1% |
| 3702861 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.59 | 43.0 | 3.91e-01 | 83.8% | 67.3% |
| 3500033 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 45.0 | 4.16e-01 | 83.8% | 74.0% |
| 3840052 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 40.0 | 4.03e-01 | 97.3% | 90.0% |
| 3505640 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.52 | 37.0 | 3.41e-01 | 86.5% | 61.7% |
| 4028185 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.52 | 38.0 | 3.63e-01 | 86.5% | 76.0% |