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LC779065.1__BES79936.1__X__00163

Bact-Vir

LC779065.1__BES79936.1__X__00163

Identity

Accession:
LC779065 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sepahanvirus› Yersinia_phage_vB_Yru_GN1

TaxID: 3074381

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-152
PDB
Domain cluster: rep: IMGVR_UViG_3300014887_000003-3300014887-Ga0180302_1000002739__D2-143
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01751.29 best Toprim 46.9 3.50e-12 84.8% 94.8%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gaiA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.84 69.0 7.42e-01 100.0% 99.2%
6k8nA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.84 80.0 7.91e-01 100.0% 98.7%
1gkuB05 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.83 64.0 7.15e-01 98.0% 98.3%
5uj1A01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.80 72.0 7.40e-01 100.0% 98.6%
1t6t200 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.70 43.0 4.99e-01 86.1% 83.6%
3uhjC01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.70 43.0 4.32e-01 100.0% 60.5%
1ujnA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 41.0 4.08e-01 100.0% 64.0%
1pdoA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.60 45.0 4.80e-01 95.4% 89.9%
4y7uA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.59 37.0 3.28e-01 94.0% 42.4%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.58 36.0 4.10e-01 89.4% 83.3%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.57 36.0 4.31e-01 90.1% 95.9%
7d73A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 38.0 3.34e-01 94.7% 43.8%
3hdgA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 42.0 4.56e-01 93.4% 91.9%
6c5cA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 41.0 3.93e-01 100.0% 64.8%
3b2nA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 41.0 4.46e-01 93.4% 96.7%
1eucB03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.55 43.0 4.38e-01 93.4% 84.2%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.55 41.0 4.44e-01 94.0% 95.9%
5fydB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 49.0 4.18e-01 100.0% 95.6%
5idyA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 48.0 4.07e-01 99.3% 94.7%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.53 43.0 4.57e-01 94.0% 97.0%
1zitA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 38.0 4.18e-01 92.7% 93.4%
3r14A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 47.0 4.19e-01 97.4% 91.7%
5aj3K00 3.30.420.80 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 0.53 35.0 3.66e-01 84.8% 72.8%
4bg8A01 3.30.420.430 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 41.0 4.39e-01 96.7% 96.1%
1e5dA01 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 45.0 4.64e-01 93.4% 98.6%
1h5qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 47.0 3.98e-01 99.3% 95.0%
2ohhA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.53 45.0 4.60e-01 93.4% 99.3%
4gmgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 48.0 4.34e-01 100.0% 77.3%
4d02A02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 45.0 4.60e-01 93.4% 99.3%
1td2A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 45.0 3.66e-01 93.4% 79.4%
4ezbA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 47.0 4.46e-01 100.0% 93.9%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 34.0 4.03e-01 82.1% 98.1%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 44.0 3.59e-01 93.4% 77.0%
1ezrA00 3.90.245.10 Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like 0.51 46.0 3.67e-01 100.0% 86.9%
3qvoA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 45.0 4.15e-01 98.0% 91.3%
2vliB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 44.0 4.21e-01 93.4% 93.1%
1c2yA00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.51 41.0 4.11e-01 94.7% 84.5%
3pffA05 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.50 40.0 3.88e-01 93.4% 73.7%
4bmvI00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 44.0 3.75e-01 96.7% 92.1%
2zj3A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.50 39.0 3.95e-01 92.7% 83.1%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4683136 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.97 80.0 8.68e-01 96.0% 98.5%
3587568 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.95 89.0 8.94e-01 96.0% 98.7%
3590579 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.92 84.0 8.39e-01 94.7% 98.7%
4142264 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.89 69.0 7.78e-01 86.1% 100.0%
4976525 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.86 80.0 7.88e-01 97.4% 100.0%
3926546 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.84 79.0 7.56e-01 98.0% 97.6%
4880710 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.81 76.0 6.96e-01 100.0% 90.1%
4442595 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.80 73.0 5.50e-01 100.0% 44.0%
5036017 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.80 76.0 6.47e-01 100.0% 76.1%
3953940 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.80 70.0 7.06e-01 95.4% 91.3%
5009494 7522.1.1.0 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.75 50.0 5.33e-01 93.4% 77.7%
5049470 7522.1.1.6 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PF30897 0.68 48.0 4.70e-01 93.4% 66.7%
5061634 2007.6.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C 0.66 47.0 4.47e-01 92.7% 62.6%
4961221 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.66 35.0 4.02e-01 94.0% 68.2%
3574126 2007.1.4.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat 0.66 41.0 4.70e-01 97.4% 84.5%
5007927 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 43.0 4.56e-01 93.4% 75.2%
3463741 7516.1.1.16 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 0.63 36.0 2.90e-01 94.7% 29.1%
4929051 7604.1.1.0 ↗ a/b three-layered sandwiches › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit › a/b domain in Acetophenone carboxylase (Apc) alpha subunit 0.61 45.0 4.93e-01 93.4% 94.2%
5013107 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.61 40.0 4.49e-01 95.4% 87.0%
4954782 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.60 41.0 4.67e-01 95.4% 96.4%
3476094 7590.1.1.2 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.60 43.0 4.25e-01 96.0% 70.0%
4944913 2007.1.13.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase › FAD_oxidored 0.59 49.0 4.99e-01 98.7% 90.3%
4969766 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.59 37.0 3.27e-01 94.0% 42.2%
3474979 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.59 42.0 4.23e-01 96.7% 72.3%
3273599 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 36.0 3.95e-01 92.1% 76.3%
4976249 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 4.61e-01 94.0% 97.4%
4988335 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 43.0 4.68e-01 100.0% 96.0%
4943043 2007.1.3.71 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › PAS_4 0.57 43.0 4.58e-01 94.7% 91.5%
4282149 2484.1.1.38 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.56 40.0 4.36e-01 94.0% 91.7%
3427982 2006.1.1.52 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › PF28688 0.56 34.0 3.51e-01 93.4% 60.0%
4947743 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.55 39.0 3.83e-01 99.3% 65.9%
4997956 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.54 47.0 4.75e-01 93.4% 92.6%
5082297 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 40.0 3.88e-01 98.0% 68.5%
4182115 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.54 40.0 3.98e-01 98.0% 71.9%
4464341 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 40.0 4.36e-01 94.0% 95.8%
4599948 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 40.0 3.87e-01 98.0% 68.2%
5075712 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.53 40.0 3.80e-01 98.0% 66.9%
2979135 2484.1.1.7 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 0.53 35.0 3.86e-01 84.8% 85.3%
3793098 7590.1.1.2 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.53 41.0 4.04e-01 95.4% 75.2%
3797618 7590.1.1.0 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs 0.53 41.0 3.96e-01 95.4% 70.9%
10000 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.53 45.0 4.56e-01 93.4% 92.8%
3211938 7590.1.1.2 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.53 41.0 3.92e-01 96.0% 70.3%
3455115 2002.1.1.96 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › S-methyl_trans 0.53 42.0 3.33e-01 84.8% 82.2%
4945830 2484.1.1.55 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH_dom 0.53 39.0 3.83e-01 98.0% 71.2%
1891978 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.53 45.0 4.53e-01 93.4% 94.7%
4318623 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.52 45.0 4.42e-01 93.4% 89.4%
4954808 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.52 44.0 4.54e-01 93.4% 96.6%
5060442 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.52 45.0 4.58e-01 93.4% 97.9%
5047685 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.52 45.0 4.59e-01 93.4% 95.2%
3257875 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 44.0 3.91e-01 93.4% 93.5%
None — 0.52 47.0 4.53e-01 100.0% 98.2%
5001244 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.52 43.0 4.45e-01 93.4% 95.2%
4952580 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.51 45.0 3.84e-01 94.7% 90.4%
5055151 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.51 43.0 4.39e-01 93.4% 96.6%
5045711 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.51 41.0 4.17e-01 93.4% 89.3%
3950497 2003.6.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.50 44.0 3.61e-01 94.7% 82.8%
2877581 2484.1.1.95 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase-T7_RNaseH-like 0.50 44.0 3.67e-01 94.0% 66.2%
4980106 2007.2.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 0.50 42.0 4.22e-01 93.4% 92.0%
D2 high residues 165-206_478-573
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01131.26 best Topoisom_bac 52.1 7.80e-14 55.8% 17.5%
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.87 81.0 7.74e-01 97.1% 89.7%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.87 83.0 7.77e-01 100.0% 92.6%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.82 77.0 6.95e-01 100.0% 91.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 44.0 4.62e-01 100.0% 67.4%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 39.0 4.74e-01 86.2% 83.3%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 45.0 4.79e-01 100.0% 72.6%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 37.0 4.93e-01 94.9% 100.0%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 39.0 5.08e-01 80.4% 100.0%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 37.0 4.81e-01 84.1% 96.2%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 43.0 4.16e-01 100.0% 58.3%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 40.0 5.08e-01 78.3% 100.0%
2fbkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 43.0 4.17e-01 71.0% 59.0%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 36.0 4.65e-01 84.1% 98.7%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 37.0 4.76e-01 82.6% 100.0%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 36.0 4.29e-01 84.8% 83.7%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 36.0 4.40e-01 70.3% 88.8%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 35.0 4.38e-01 77.5% 93.9%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 35.0 4.29e-01 83.3% 92.7%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 36.0 4.33e-01 92.0% 88.9%
2rkhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 38.0 4.67e-01 93.5% 98.9%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 34.0 4.21e-01 80.4% 89.4%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 35.0 4.21e-01 81.9% 90.9%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 35.0 4.18e-01 97.1% 88.8%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.34e-01 75.4% 77.9%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.49e-01 86.2% 83.7%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.20e-01 100.0% 74.5%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 34.0 3.72e-01 83.3% 76.1%
2vlaA03 1.10.10.2090 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 40.0 4.26e-01 79.0% 98.3%
2rd3D00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.52 47.0 4.04e-01 100.0% 92.7%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.51 39.0 3.87e-01 98.6% 77.4%
1xmxA03 1.10.10.680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) 0.51 33.0 3.89e-01 92.0% 100.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5003459 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.94 91.0 8.03e-01 100.0% 81.6%
5000448 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.93 90.0 7.57e-01 100.0% 77.6%
5022395 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.92 88.0 8.19e-01 100.0% 91.5%
3587937 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.92 88.0 7.43e-01 100.0% 80.5%
4971257 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.91 89.0 7.84e-01 100.0% 81.1%
4930522 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.91 89.0 7.92e-01 100.0% 83.3%
3593805 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.90 86.0 5.99e-01 100.0% 42.6%
3614788 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.90 86.0 6.10e-01 100.0% 44.2%
4283969 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.89 85.0 7.42e-01 100.0% 84.1%
4006756 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.89 85.0 6.31e-01 100.0% 92.5%
4943300 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.88 84.0 7.57e-01 100.0% 83.9%
3963197 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.88 84.0 7.32e-01 100.0% 84.1%
5062049 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.88 84.0 7.74e-01 100.0% 89.4%
3704475 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.88 84.0 7.02e-01 100.0% 74.9%
4442595 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.87 83.0 6.06e-01 99.3% 49.2%
4192840 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.86 82.0 7.14e-01 100.0% 85.6%
4956004 2004.1.1.1195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Topoisom_bac 0.86 80.0 5.49e-01 97.1% 33.8%
3587546 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.85 82.0 7.72e-01 100.0% 87.5%
4264627 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.85 81.0 7.29e-01 100.0% 81.1%
3655172 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.85 81.0 6.98e-01 100.0% 85.0%
4988773 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 77.0 7.46e-01 96.4% 88.0%
5005181 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 79.0 7.22e-01 100.0% 83.4%
5083713 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.80 59.0 6.30e-01 76.1% 86.7%
3654747 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.79 57.0 5.77e-01 73.9% 80.7%
5021052 101.1.2.728 ↗ alpha arrays › HTH › HTH › winged helix domain › PF31122 0.72 42.0 5.44e-01 92.8% 100.0%
4668436 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.72 40.0 5.29e-01 87.7% 100.0%
3602631 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.72 38.0 4.84e-01 85.5% 87.5%
5047881 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 40.0 5.26e-01 89.1% 97.5%
4997786 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 40.0 5.03e-01 81.9% 91.8%
4887378 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.70 51.0 4.70e-01 75.4% 71.5%
4931635 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.69 41.0 5.14e-01 98.6% 96.4%
4929470 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.69 42.0 4.78e-01 88.4% 80.0%
4970540 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 44.0 5.20e-01 85.5% 94.7%
4927033 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.68 39.0 4.76e-01 99.3% 90.6%
5058140 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.67 46.0 5.41e-01 70.3% 100.0%
4963813 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.67 41.0 4.93e-01 89.9% 93.3%
4932302 101.1.2.913 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_Lhr 0.66 37.0 4.76e-01 84.8% 95.0%
3282607 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 43.0 4.57e-01 97.8% 72.8%
5075915 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 37.0 4.63e-01 85.5% 90.6%
5043021 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 40.0 4.92e-01 97.8% 94.4%
2137768 101.1.2.49 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.64 41.0 3.76e-01 77.5% 50.9%
4964118 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.64 40.0 4.67e-01 93.5% 87.0%
3291498 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 43.0 4.26e-01 100.0% 64.8%
3808197 101.1.2.396 ↗ alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.60 40.0 4.00e-01 82.6% 66.4%
5040315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 36.0 4.34e-01 83.3% 91.1%
5025290 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.58 45.0 4.65e-01 94.2% 85.4%
5024114 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.57 45.0 4.54e-01 89.1% 80.7%
5012052 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.57 42.0 4.38e-01 84.8% 81.5%
5008053 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 40.0 4.61e-01 96.4% 97.1%
5035979 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 4.55e-01 78.3% 99.2%
4039721 101.1.2.652 ↗ alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.56 45.0 4.59e-01 100.0% 85.9%
4999461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 42.0 4.10e-01 99.3% 74.0%
4953298 101.1.2.934 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.54 42.0 4.38e-01 93.5% 86.2%
4933514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 4.16e-01 84.1% 93.6%
5014943 101.1.2.925 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7344 0.51 39.0 3.90e-01 81.2% 93.1%
4139293 101.1.2.546 ↗ alpha arrays › HTH › HTH › winged helix domain › Methyltransf_2 0.51 44.0 3.17e-01 93.5% 44.9%
D3 high residues 213-259_392-463
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.80 75.0 6.53e-01 100.0% 93.0%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.75 68.0 6.69e-01 100.0% 91.4%
2gaiA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.72 63.0 6.32e-01 100.0% 91.9%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 37.0 3.99e-01 93.3% 67.7%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 37.0 4.11e-01 93.3% 73.6%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 36.0 3.72e-01 99.2% 67.3%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 39.0 3.62e-01 85.7% 56.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.90e-01 94.1% 97.1%
2egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 4.27e-01 89.9% 81.0%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 46.0 4.13e-01 92.4% 93.3%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 42.0 3.26e-01 82.4% 55.0%
3qooA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 3.81e-01 77.3% 69.4%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 45.0 4.12e-01 93.3% 86.4%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.53 39.0 3.41e-01 77.3% 98.9%
5ixgA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.53 41.0 3.70e-01 83.2% 93.5%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.61e-01 83.2% 62.2%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.52 38.0 4.04e-01 75.6% 99.0%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 44.0 3.68e-01 94.1% 71.5%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 38.0 3.85e-01 77.3% 100.0%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.51 39.0 2.90e-01 79.8% 76.3%
2c9jA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 44.0 3.63e-01 94.1% 70.9%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.64e-01 71.4% 88.2%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.50 45.0 3.77e-01 95.8% 71.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010552 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.78 73.0 7.09e-01 100.0% 93.8%
4113222 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.77 72.0 6.76e-01 100.0% 94.3%
4136946 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.77 71.0 6.47e-01 100.0% 93.5%
5005180 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.76 71.0 6.99e-01 100.0% 96.8%
3464474 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.76 71.0 6.40e-01 100.0% 95.5%
3831913 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.75 70.0 6.70e-01 100.0% 92.6%
2765234 243.3.1.12 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.66 43.0 4.71e-01 80.7% 80.4%
3284948 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 42.0 4.94e-01 97.5% 95.3%
3525853 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.62 46.0 4.28e-01 78.2% 77.3%
3597592 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 44.0 3.67e-01 76.5% 66.8%
3631673 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.59 42.0 3.69e-01 74.8% 65.6%
3581448 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 38.0 3.92e-01 79.8% 68.7%
3473720 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.55 38.0 3.98e-01 95.0% 77.3%
3336425 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.01e-01 79.8% 95.6%
4987319 1036.1.1.2 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 0.54 37.0 3.91e-01 79.0% 77.3%
3837825 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.76e-01 82.4% 96.8%
3373567 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 39.0 3.63e-01 79.8% 84.5%
5000965 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.52 32.0 3.59e-01 93.3% 80.0%
5001466 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.51 33.0 2.42e-01 72.3% 22.4%
3764436 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.51 45.0 3.94e-01 94.1% 73.7%
3333639 11.1.1.51 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.50 38.0 3.59e-01 79.8% 90.3%
D4 high residues 267-388
PDB
Domain cluster: rep: KX077896.1__ANM47700.1__X__00069__D72-191
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01131.26 best Topoisom_bac 64.6 1.30e-17 100.0% 28.9%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i7dA04 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.82 77.0 7.63e-01 100.0% 95.3%
4cgyA04 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.81 73.0 7.32e-01 100.0% 93.6%
6k8nA02 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.79 73.0 7.48e-01 100.0% 100.0%
1cy9A01 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.78 67.0 6.83e-01 100.0% 93.2%
1gkuB08 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.76 68.0 6.90e-01 99.2% 96.6%
3nzpB03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 36.0 4.31e-01 98.4% 92.4%
3p9dG01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.58 39.0 3.09e-01 100.0% 33.2%
2vmaA00 1.20.81.30 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F 0.57 30.0 3.02e-01 92.6% 48.4%
5ui5I04 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 24.0 3.13e-01 92.6% 71.4%
1x4oA00 1.10.10.790 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module 0.52 26.0 3.15e-01 96.7% 71.8%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.50 33.0 3.76e-01 86.9% 93.1%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4466579 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.85 82.0 7.98e-01 100.0% 94.6%
4602152 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.85 80.0 7.83e-01 99.2% 95.4%
3590144 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.83 79.0 7.75e-01 100.0% 94.6%
4933036 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.82 74.0 7.40e-01 100.0% 92.8%
3590582 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.82 78.0 7.63e-01 100.0% 94.6%
3305633 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.81 74.0 7.40e-01 100.0% 94.4%
4319228 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.81 77.0 7.54e-01 100.0% 93.8%
4981102 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 72.0 7.19e-01 100.0% 92.8%
3756243 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.79 72.0 7.28e-01 100.0% 96.7%
3594756 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 74.0 7.21e-01 100.0% 93.1%
4960284 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.78 72.0 7.20e-01 100.0% 94.4%
5000123 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.78 74.0 7.17e-01 100.0% 94.8%
5051951 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.78 73.0 7.20e-01 100.0% 93.8%
4971255 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 73.0 7.25e-01 99.2% 96.8%
4976526 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 72.0 7.08e-01 99.2% 97.7%
5021952 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.77 73.0 7.00e-01 100.0% 91.1%
3176697 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.77 72.0 6.79e-01 100.0% 93.1%
4006756 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.76 68.0 4.97e-01 100.0% 38.4%
4363124 101.1.2.19 ↗ alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.75 70.0 6.78e-01 100.0% 91.1%
5014787 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 35.0 4.04e-01 83.6% 72.9%
3602825 633.12.1.0 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.59 37.0 3.63e-01 100.0% 57.7%
5013382 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 33.0 2.79e-01 100.0% 34.3%
5063374 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.54 37.0 3.66e-01 70.5% 82.2%
3491811 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.53 27.0 3.32e-01 88.5% 80.0%
4971671 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 41.0 3.74e-01 87.7% 79.9%
D5 high residues 604-672
PDB
Domain cluster: rep: Filtrate_w_scaffold_3_prodigal-single.1__X__X__00168__D101-168
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13342.13 best Toprim_Crpt 36.1 7.20e-09 84.1% 95.0%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 47.0 4.04e-01 81.2% 78.2%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 44.0 3.93e-01 79.7% 53.0%
3lifB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.56e-01 79.7% 49.3%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 44.0 3.96e-01 79.7% 68.7%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 44.0 4.09e-01 79.7% 71.1%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.60 38.0 3.03e-01 84.1% 31.9%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 43.0 3.82e-01 79.7% 53.0%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 43.0 3.74e-01 79.7% 68.1%
3c8cB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 45.0 3.78e-01 79.7% 63.7%
4owpB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.59 40.0 3.12e-01 71.0% 68.7%
6pxyA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 44.0 3.73e-01 79.7% 59.0%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.59 37.0 3.47e-01 92.8% 47.3%
6iouA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 44.0 3.75e-01 79.7% 62.5%
6fnnB01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.58 40.0 3.19e-01 71.0% 40.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 38.0 3.17e-01 94.2% 37.9%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 38.0 3.09e-01 71.0% 76.2%
4dloB01 4.10.1240.10 Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain 0.56 40.0 4.14e-01 87.0% 81.8%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 44.0 3.87e-01 88.4% 86.2%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 41.0 3.38e-01 79.7% 57.1%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 41.0 3.35e-01 82.6% 52.1%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.55 40.0 3.26e-01 79.7% 51.4%
3k3dA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 39.0 3.32e-01 81.2% 69.8%
7x4qA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 37.0 2.92e-01 73.9% 60.3%
3b42A00 3.30.450.290 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 39.0 3.22e-01 81.2% 55.6%
3t4lA02 3.30.450.350 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › CHASE domain 0.52 43.0 3.18e-01 100.0% 54.9%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 35.0 3.17e-01 75.4% 81.4%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590585 375.1.1.72 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Toprim_Crpt 0.85 78.0 7.10e-01 100.0% 78.9%
5047125 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.66 49.0 3.34e-01 81.2% 33.5%
5003155 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.64 48.0 3.58e-01 81.2% 47.6%
3285845 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.63 40.0 3.21e-01 94.2% 32.6%
2713759 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.62 41.0 3.81e-01 98.6% 54.0%
4199524 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.62 46.0 3.19e-01 79.7% 28.5%
2713758 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.62 41.0 3.16e-01 98.6% 30.9%
4148861 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 46.0 3.59e-01 79.7% 65.5%
4081896 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 45.0 3.79e-01 79.7% 55.0%
3690818 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.61 46.0 3.79e-01 82.6% 71.5%
None — 0.60 45.0 3.07e-01 79.7% 27.3%
1627069 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.60 45.0 3.46e-01 79.7% 47.7%
3387976 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.60 45.0 3.54e-01 81.2% 52.4%
3387810 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.59 44.0 3.01e-01 79.7% 30.2%
1713365 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.59 44.0 3.31e-01 79.7% 42.9%
1069946 219.1.1.52 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 0.59 37.0 2.91e-01 92.8% 26.4%
6840 223.1.1.19 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › YkuI_C 0.59 43.0 3.46e-01 79.7% 54.5%
4328158 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.59 44.0 3.60e-01 82.6% 73.3%
5016426 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.59 36.0 2.82e-01 98.6% 27.0%
3927363 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 31.0 3.50e-01 79.7% 70.0%
3957374 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 37.0 3.71e-01 98.6% 64.3%
3386304 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.57 43.0 3.26e-01 81.2% 47.6%
3639711 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.56 41.0 3.64e-01 82.6% 82.6%
3961371 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 37.0 3.57e-01 98.6% 58.7%
3286703 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 45.0 3.76e-01 91.3% 50.8%
3832176 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.56 32.0 3.26e-01 91.3% 54.3%
3961990 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 36.0 3.51e-01 92.8% 60.0%
4999024 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 36.0 2.66e-01 98.6% 24.4%
3386086 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.53 40.0 3.42e-01 81.2% 61.7%
3498911 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 41.0 3.69e-01 85.5% 64.3%
3546981 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.53 39.0 3.08e-01 98.6% 38.6%
1272104 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 38.0 3.53e-01 81.2% 89.6%
4963926 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 3.03e-01 82.6% 76.2%
5028087 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 42.0 3.67e-01 100.0% 67.8%
4008035 223.1.1.112 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF30417 0.50 42.0 2.92e-01 100.0% 52.4%