←Back to structures
LC779065.1__BES79950.1__X__00177
Bact-VirLC779065.1__BES79950.1__X__00177
Identity
- Accession:
- LC779065 ↗
- Kingdom:
- phage
Quality
68.2
mean pLDDT
Taxonomy
TaxID: 3074381
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 845-917
Domain cluster:
representative
D2
medium
residues 41-141
D3
medium
residues 443-502
Domain cluster:
representative
CATH (57)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ljzC06 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.87 | 80.0 | 7.37e-01 | 100.0% | 89.3% |
| 2a6hC05 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.85 | 77.0 | 7.14e-01 | 100.0% | 80.0% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.84 | 72.0 | 7.38e-01 | 100.0% | 94.8% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.72 | 50.0 | 4.72e-01 | 91.7% | 60.3% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 46.0 | 4.97e-01 | 100.0% | 80.0% |
| 4oonA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 59.0 | 4.84e-01 | 95.0% | 72.1% |
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 59.0 | 4.97e-01 | 95.0% | 80.0% |
| 3tssA02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 60.0 | 5.66e-01 | 98.3% | 100.0% |
| 2mfiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 50.0 | 4.27e-01 | 91.7% | 51.0% |
| 3rioA01 | 2.30.24.10 | Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain | 0.65 | 49.0 | 4.77e-01 | 95.0% | 72.1% |
| 2ba0A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 56.0 | 4.96e-01 | 95.0% | 85.1% |
| 2xk0A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 43.0 | 4.10e-01 | 100.0% | 59.4% |
| 2awnC02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 57.0 | 5.17e-01 | 96.7% | 82.1% |
| 2rcnA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 54.0 | 5.43e-01 | 95.0% | 90.2% |
| 3bzcA05 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 56.0 | 4.71e-01 | 95.0% | 70.8% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 54.0 | 5.07e-01 | 93.3% | 94.5% |
| 1wfqA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 55.0 | 5.19e-01 | 96.7% | 89.0% |
| 2wg5F02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.63 | 55.0 | 5.61e-01 | 95.0% | 96.6% |
| 3bdlA01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 54.0 | 3.92e-01 | 96.7% | 65.7% |
| 2ahoB01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 54.0 | 4.91e-01 | 95.0% | 81.2% |
| 4gnxA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 56.0 | 4.53e-01 | 98.3% | 55.6% |
| 3h8lA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 49.0 | 3.30e-01 | 85.0% | 45.4% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 53.0 | 4.83e-01 | 96.7% | 92.5% |
| 2k52A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 52.0 | 4.89e-01 | 93.3% | 87.8% |
| 6az1E02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.61 | 48.0 | 5.17e-01 | 93.3% | 100.0% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 42.0 | 4.36e-01 | 100.0% | 78.2% |
| 3cobC00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.61 | 48.0 | 3.07e-01 | 90.0% | 81.8% |
| 2dgyA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 51.0 | 4.73e-01 | 95.0% | 79.7% |
| 2khiA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 53.0 | 4.53e-01 | 96.7% | 74.7% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 38.0 | 4.39e-01 | 93.3% | 97.4% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 52.0 | 4.87e-01 | 95.0% | 86.3% |
| 5twbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 40.0 | 2.75e-01 | 70.0% | 87.3% |
| 1kl9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 52.0 | 4.87e-01 | 96.7% | 78.7% |
| 1d7qA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 51.0 | 3.86e-01 | 96.7% | 44.1% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.58 | 47.0 | 3.96e-01 | 91.7% | 92.5% |
| 4k7zA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 46.0 | 3.09e-01 | 86.7% | 57.6% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 40.0 | 3.96e-01 | 100.0% | 67.7% |
| 3oyyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 48.0 | 4.72e-01 | 95.0% | 92.3% |
| 6rjiA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 45.0 | 4.81e-01 | 95.0% | 98.1% |
| 1khiA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 49.0 | 4.65e-01 | 96.7% | 91.7% |
| 4hb9A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 40.0 | 2.47e-01 | 75.0% | 90.7% |
| 2rf4E02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 49.0 | 4.42e-01 | 96.7% | 98.8% |
| 1h6vA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 44.0 | 2.95e-01 | 85.0% | 59.1% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 4.03e-01 | 90.0% | 79.3% |
| 1vkdA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 42.0 | 2.69e-01 | 86.7% | 82.8% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.55 | 38.0 | 3.47e-01 | 73.3% | 89.9% |
| 1rl1A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 45.0 | 4.03e-01 | 100.0% | 64.1% |
| 1rvjH02 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.54 | 43.0 | 3.34e-01 | 100.0% | 39.4% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 42.0 | 3.87e-01 | 100.0% | 64.9% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 40.0 | 3.98e-01 | 98.3% | 77.4% |
| 3zqsA01 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.53 | 40.0 | 3.54e-01 | 83.3% | 83.0% |
| 3kbgA02 | 2.40.50.740 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain | 0.52 | 40.0 | 4.19e-01 | 96.7% | 98.1% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 42.0 | 2.97e-01 | 91.7% | 73.5% |
| 7c9rH01 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.52 | 43.0 | 3.25e-01 | 100.0% | 37.2% |
| 3d4rB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 44.0 | 4.24e-01 | 100.0% | 86.8% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.51 | 45.0 | 4.41e-01 | 98.3% | 87.9% |
| 2zuoA08 | 2.30.30.620 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 28.0 | 2.84e-01 | 75.0% | 50.0% |
ECOD (88)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4611577 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.90 | 83.0 | 7.44e-01 | 100.0% | 88.7% |
| 4098530 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.90 | 82.0 | 5.46e-01 | 100.0% | 28.8% |
| 4067162 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.89 | 74.0 | 7.49e-01 | 100.0% | 88.3% |
| 4353811 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.89 | 81.0 | 7.67e-01 | 100.0% | 84.3% |
| 4587689 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.89 | 82.0 | 7.58e-01 | 100.0% | 80.0% |
| 4359531 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.89 | 82.0 | 7.34e-01 | 100.0% | 86.3% |
| 4477076 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.88 | 81.0 | 7.29e-01 | 100.0% | 85.0% |
| 4171455 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.88 | 81.0 | 6.69e-01 | 100.0% | 87.0% |
| 4203681 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.88 | 80.0 | 7.27e-01 | 100.0% | 86.1% |
| 4054448 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.87 | 80.0 | 7.61e-01 | 100.0% | 85.7% |
| 4876256 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.87 | 80.0 | 7.24e-01 | 100.0% | 86.1% |
| 4049232 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.87 | 80.0 | 7.18e-01 | 100.0% | 83.7% |
| 4099964 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.87 | 75.0 | 7.33e-01 | 100.0% | 84.6% |
| 4459871 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.86 | 79.0 | 7.30e-01 | 100.0% | 80.0% |
| 4216608 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.86 | 78.0 | 7.05e-01 | 100.0% | 86.3% |
| 4310351 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.86 | 77.0 | 7.34e-01 | 100.0% | 84.3% |
| 4054539 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.85 | 77.0 | 6.98e-01 | 100.0% | 82.5% |
| 4456732 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.84 | 73.0 | 6.52e-01 | 100.0% | 68.8% |
| 4505755 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.84 | 72.0 | 6.89e-01 | 100.0% | 81.4% |
| 3056918 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.83 | 75.0 | 6.81e-01 | 100.0% | 87.5% |
| 4614224 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.82 | 54.0 | 5.94e-01 | 91.7% | 82.0% |
| 4038412 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.82 | 66.0 | 6.43e-01 | 100.0% | 80.0% |
| 4512566 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.82 | 54.0 | 6.12e-01 | 91.7% | 91.1% |
| 4206331 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.82 | 74.0 | 6.85e-01 | 100.0% | 82.7% |
| 4435672 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.81 | 68.0 | 6.59e-01 | 100.0% | 83.1% |
| 3230584 | 2.1.1.318 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF7037 | 0.80 | 54.0 | 5.87e-01 | 90.0% | 84.0% |
| 4384294 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.80 | 52.0 | 6.12e-01 | 90.0% | 100.0% |
| 4119875 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.80 | 66.0 | 6.47e-01 | 100.0% | 83.1% |
| 4269264 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.79 | 52.0 | 5.93e-01 | 91.7% | 91.1% |
| 3967108 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.79 | 51.0 | 6.01e-01 | 90.0% | 100.0% |
| 4378659 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.78 | 53.0 | 5.95e-01 | 91.7% | 93.3% |
| 4532808 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.78 | 55.0 | 5.98e-01 | 96.7% | 88.0% |
| 4553077 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.78 | 51.0 | 5.84e-01 | 91.7% | 91.1% |
| 4183857 | 325.1.7.30 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 | 0.77 | 64.0 | 5.95e-01 | 100.0% | 72.0% |
| 3720564 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.74 | 68.0 | 6.48e-01 | 100.0% | 87.1% |
| 4285716 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 52.0 | 5.60e-01 | 91.7% | 88.0% |
| 2482315 | 2.1.1.60 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N | 0.72 | 53.0 | 5.57e-01 | 100.0% | 86.8% |
| 4233484 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 56.0 | 5.02e-01 | 95.0% | 63.7% |
| 4514183 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.68 | 58.0 | 5.68e-01 | 96.7% | 98.5% |
| 5051419 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 51.0 | 5.29e-01 | 95.0% | 87.3% |
| 4236717 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.68 | 59.0 | 4.67e-01 | 95.0% | 49.2% |
| 4588738 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.68 | 58.0 | 5.14e-01 | 93.3% | 94.1% |
| 3181250 | 2.1.1.116 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 | 0.67 | 59.0 | 4.58e-01 | 96.7% | 57.6% |
| 4380179 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.67 | 59.0 | 5.02e-01 | 96.7% | 88.4% |
| 3435395 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.67 | 57.0 | 3.88e-01 | 93.3% | 34.1% |
| 3839910 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.67 | 57.0 | 5.61e-01 | 91.7% | 96.8% |
| 4654223 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.66 | 55.0 | 4.92e-01 | 91.7% | 77.6% |
| 5051148 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 50.0 | 5.01e-01 | 100.0% | 81.7% |
| 4541708 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.66 | 57.0 | 4.53e-01 | 95.0% | 58.3% |
| 4231997 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.65 | 58.0 | 4.81e-01 | 96.7% | 67.0% |
| 3808583 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.65 | 57.0 | 4.98e-01 | 96.7% | 74.4% |
| 3972407 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 57.0 | 4.05e-01 | 96.7% | 94.3% |
| 4237578 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.64 | 56.0 | 4.40e-01 | 96.7% | 47.5% |
| 4614733 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 56.0 | 4.40e-01 | 98.3% | 89.6% |
| 4534120 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.63 | 55.0 | 3.73e-01 | 96.7% | 47.0% |
| 3970344 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.63 | 53.0 | 4.28e-01 | 95.0% | 50.8% |
| 4654307 | 2.1.1.73 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N | 0.62 | 54.0 | 5.12e-01 | 93.3% | 92.9% |
| 4889436 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.62 | 52.0 | 5.23e-01 | 96.7% | 90.3% |
| 4626642 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 55.0 | 5.04e-01 | 100.0% | 90.0% |
| 3576566 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.62 | 55.0 | 4.94e-01 | 96.7% | 77.5% |
| 5081103 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.61 | 54.0 | 4.16e-01 | 95.0% | 92.0% |
| 4451633 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.61 | 54.0 | 4.14e-01 | 96.7% | 95.4% |
| 4113537 | 2.1.1.327 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27401 | 0.61 | 53.0 | 5.17e-01 | 96.7% | 93.8% |
| 5077962 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.61 | 53.0 | 4.12e-01 | 95.0% | 96.0% |
| 3770704 | 2.1.1.49 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MRP-S35 | 0.61 | 39.0 | 3.93e-01 | 96.7% | 65.0% |
| 4526081 | 2.1.1.73 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N | 0.61 | 53.0 | 5.02e-01 | 95.0% | 92.9% |
| 4239444 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.61 | 53.0 | 5.31e-01 | 100.0% | 96.7% |
| 2759388 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 53.0 | 5.02e-01 | 96.7% | 87.3% |
| 4353586 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.60 | 53.0 | 4.44e-01 | 96.7% | 60.0% |
| 3603885 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.60 | 54.0 | 3.99e-01 | 98.3% | 40.7% |
| 3504513 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.59 | 54.0 | 4.31e-01 | 100.0% | 52.2% |
| 3387984 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.59 | 50.0 | 4.49e-01 | 95.0% | 74.1% |
| 4114715 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 53.0 | 4.39e-01 | 100.0% | 82.9% |
| 4928523 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.59 | 42.0 | 4.35e-01 | 100.0% | 79.3% |
| 3490807 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.58 | 49.0 | 3.48e-01 | 91.7% | 34.3% |
| 5066882 | 56.2.1.0 ↗ | beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT | 0.58 | 42.0 | 4.48e-01 | 100.0% | 94.0% |
| 3602009 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 51.0 | 4.02e-01 | 100.0% | 46.2% |
| 1881367 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.57 | 50.0 | 4.98e-01 | 100.0% | 95.2% |
| 3970340 | 2.7.1.4 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › DUF6484 | 0.57 | 49.0 | 3.85e-01 | 96.7% | 48.1% |
| 3868320 | 4.1.1.65 ↗ | beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor | 0.55 | 44.0 | 4.28e-01 | 100.0% | 78.5% |
| 3176295 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 42.0 | 2.63e-01 | 85.0% | 17.4% |
| 4976969 | 2.1.1.9 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e | 0.54 | 44.0 | 4.21e-01 | 96.7% | 94.7% |
| 332520 | 2004.1.1.179 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NTPase_P4 | 0.53 | 37.0 | 2.42e-01 | 73.3% | 55.9% |
| 4000394 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 46.0 | 4.39e-01 | 96.7% | 88.6% |
| 3976533 | 3943.1.1.5 ↗ | beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › WZC_N | 0.53 | 42.0 | 3.69e-01 | 95.0% | 66.0% |
| 5022356 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.51 | 40.0 | 4.18e-01 | 91.7% | 96.4% |
| 3992808 | 5.1.4.7 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 | 0.50 | 40.0 | 2.64e-01 | 93.3% | 19.0% |
| 3414267 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.50 | 41.0 | 2.78e-01 | 96.7% | 23.1% |
D4
medium
residues 546-641
Domain cluster:
rep: conserved_DNA-directed_RNA_polymerase_subunit_beta__YP_009094523__Melbournevirus__1560514__D901-974
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d4rB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.85 | 59.0 | 6.89e-01 | 93.8% | 100.0% |
| 4rcnB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.78 | 57.0 | 6.37e-01 | 95.8% | 94.8% |
| 3n6rA04 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.77 | 54.0 | 6.22e-01 | 90.6% | 100.0% |
| 4tkoB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.77 | 51.0 | 6.11e-01 | 93.8% | 100.0% |
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.76 | 70.0 | 5.60e-01 | 97.9% | 100.0% |
| 2a6hC06 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.74 | 68.0 | 6.05e-01 | 99.0% | 98.5% |
| 3va7A07 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.74 | 53.0 | 5.91e-01 | 93.8% | 94.7% |
| 3fmcA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.74 | 55.0 | 6.16e-01 | 92.7% | 100.0% |
| 2pmzB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.73 | 68.0 | 6.20e-01 | 100.0% | 89.5% |
| 1z6hA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.72 | 50.0 | 5.71e-01 | 91.7% | 97.2% |
| 2dn8A01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.71 | 50.0 | 5.60e-01 | 92.7% | 97.2% |
| 1ghjA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.70 | 54.0 | 5.93e-01 | 94.8% | 100.0% |
| 1vf7A02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.70 | 50.0 | 5.66e-01 | 93.8% | 100.0% |
| 4kksA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.69 | 50.0 | 5.62e-01 | 88.5% | 100.0% |
| 6ruiB07 | 2.40.50.150 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain | 0.69 | 64.0 | 5.79e-01 | 100.0% | 89.7% |
| 2edgA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.66 | 57.0 | 5.14e-01 | 97.9% | 68.5% |
| 1y8cA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 38.0 | 3.03e-01 | 99.0% | 29.0% |
| 4pbdA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 48.0 | 4.78e-01 | 99.0% | 72.5% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.65 | 37.0 | 3.67e-01 | 93.8% | 53.1% |
| 6mv2A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 48.0 | 4.77e-01 | 97.9% | 73.5% |
| 3tzuA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 56.0 | 5.08e-01 | 99.0% | 70.9% |
| 2je6I01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 38.0 | 4.77e-01 | 82.3% | 100.0% |
| 2o30A00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 43.0 | 4.56e-01 | 96.9% | 81.7% |
| 3mcaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 37.0 | 3.46e-01 | 96.9% | 50.0% |
| 4dmgA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 41.0 | 3.14e-01 | 100.0% | 32.7% |
| 3glaA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 46.0 | 4.67e-01 | 95.8% | 87.6% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 37.0 | 3.65e-01 | 93.8% | 62.4% |
| 3h2bB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 37.0 | 2.98e-01 | 99.0% | 33.2% |
| 3w1zC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 47.0 | 4.25e-01 | 97.9% | 68.5% |
| 3qgaA02 | 2.10.150.10 | Mainly Beta › Ribbon › Urease, subunit B › Urease, beta subunit | 0.55 | 38.0 | 3.58e-01 | 99.0% | 56.6% |
| 2bm0A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 34.0 | 3.40e-01 | 93.8% | 58.3% |
| 3p26B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 35.0 | 3.49e-01 | 95.8% | 62.4% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 33.0 | 3.51e-01 | 95.8% | 68.2% |
| 2oq5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 35.0 | 3.43e-01 | 95.8% | 62.5% |
| 6ewnA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 43.0 | 4.28e-01 | 97.9% | 88.9% |
| 1wzaA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 32.0 | 3.45e-01 | 93.8% | 75.9% |
| 1auyB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 46.0 | 3.68e-01 | 100.0% | 82.0% |
| 7pzoA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 34.0 | 3.40e-01 | 96.9% | 67.7% |
| 3c0kA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 34.0 | 2.70e-01 | 95.8% | 30.8% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5038608 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.79 | 60.0 | 6.56e-01 | 97.9% | 97.4% |
| 3941959 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.78 | 58.0 | 6.49e-01 | 97.9% | 98.7% |
| 4932693 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.78 | 72.0 | 6.62e-01 | 99.0% | 100.0% |
| 4970832 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.77 | 72.0 | 6.52e-01 | 100.0% | 97.6% |
| 4448334 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.77 | 50.0 | 6.05e-01 | 92.7% | 96.9% |
| 5000301 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.77 | 71.0 | 6.59e-01 | 96.9% | 100.0% |
| 4956728 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.77 | 72.0 | 6.43e-01 | 100.0% | 97.7% |
| 4255464 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.77 | 72.0 | 5.20e-01 | 100.0% | 99.6% |
| 4944550 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.77 | 57.0 | 6.43e-01 | 95.8% | 100.0% |
| 4682340 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.76 | 71.0 | 6.45e-01 | 100.0% | 98.4% |
| 3786933 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.76 | 71.0 | 6.46e-01 | 100.0% | 99.2% |
| 4032675 | 325.1.7.52 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25997 | 0.76 | 60.0 | 6.52e-01 | 96.9% | 100.0% |
| 4629505 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.76 | 69.0 | 5.99e-01 | 96.9% | 100.0% |
| 4654615 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.76 | 71.0 | 5.17e-01 | 99.0% | 99.1% |
| 4886404 | 4042.1.1.1 ↗ | a+b complex topology › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › barrel domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_6 | 0.75 | 68.0 | 5.04e-01 | 95.8% | 100.0% |
| 4876258 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.75 | 70.0 | 6.12e-01 | 100.0% | 95.7% |
| 4120984 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.75 | 71.0 | 6.60e-01 | 100.0% | 98.3% |
| 4175999 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.75 | 68.0 | 6.44e-01 | 95.8% | 100.0% |
| 4026621 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.75 | 70.0 | 6.56e-01 | 100.0% | 98.3% |
| 3386698 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.75 | 55.0 | 5.68e-01 | 93.8% | 82.0% |
| 4513514 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.74 | 66.0 | 6.02e-01 | 94.8% | 100.0% |
| 3784627 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.74 | 53.0 | 5.71e-01 | 93.8% | 86.7% |
| 4030042 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.74 | 69.0 | 6.11e-01 | 100.0% | 97.0% |
| 3556801 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.74 | 69.0 | 6.26e-01 | 100.0% | 97.6% |
| 4067177 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.73 | 68.0 | 6.43e-01 | 96.9% | 100.0% |
| 4142586 | 325.1.7.21 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_RND | 0.73 | 58.0 | 6.27e-01 | 96.9% | 100.0% |
| 3610296 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.73 | 68.0 | 6.47e-01 | 99.0% | 100.0% |
| 4599969 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.73 | 65.0 | 6.27e-01 | 93.8% | 100.0% |
| 4587173 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.72 | 66.0 | 6.36e-01 | 95.8% | 100.0% |
| 3634043 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.72 | 55.0 | 5.69e-01 | 94.8% | 84.4% |
| 4921634 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.72 | 65.0 | 6.15e-01 | 96.9% | 96.4% |
| 3687295 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.71 | 55.0 | 5.42e-01 | 96.9% | 78.0% |
| 3273570 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.71 | 64.0 | 6.08e-01 | 96.9% | 100.0% |
| 2700176 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.71 | 66.0 | 6.21e-01 | 100.0% | 98.2% |
| 4657312 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.70 | 65.0 | 6.19e-01 | 99.0% | 100.0% |
| 3917433 | 325.1.7.23 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_Fcp1 | 0.70 | 59.0 | 5.87e-01 | 100.0% | 88.0% |
| 4105815 | 325.1.7.37 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › PF25973 | 0.69 | 58.0 | 6.11e-01 | 97.9% | 100.0% |
| 3968779 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.69 | 57.0 | 6.08e-01 | 95.8% | 100.0% |
| 4339048 | 325.1.7.22 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_CusB | 0.69 | 59.0 | 6.06e-01 | 97.9% | 100.0% |
| 3412875 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.68 | 63.0 | 6.15e-01 | 100.0% | 95.2% |
| 1499824 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.67 | 61.0 | 5.39e-01 | 100.0% | 94.2% |
| 3616946 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.67 | 62.0 | 6.01e-01 | 99.0% | 99.0% |
| 2773895 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.67 | 59.0 | 5.98e-01 | 100.0% | 95.7% |
| 3737341 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.67 | 59.0 | 5.29e-01 | 95.8% | 82.3% |
| 3695559 | 325.1.7.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 | 0.66 | 61.0 | 5.46e-01 | 100.0% | 97.7% |
| 3907054 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.64 | 47.0 | 4.70e-01 | 97.9% | 75.0% |
| 169505 | 319.1.1.7 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › SHQ1-like_CS | 0.64 | 47.0 | 4.74e-01 | 99.0% | 76.8% |
| 1503076 | 325.1.7.21 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_RND | 0.63 | 55.0 | 5.33e-01 | 94.8% | 95.4% |
| 3712050 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.63 | 56.0 | 4.93e-01 | 99.0% | 97.9% |
| 3634241 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.62 | 48.0 | 5.21e-01 | 84.4% | 98.8% |
| 3488074 | 11.1.1.847 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Unc5_NetrinR_N | 0.62 | 40.0 | 3.62e-01 | 100.0% | 47.4% |
| 3404406 | 325.1.7.23 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_Fcp1 | 0.61 | 54.0 | 5.05e-01 | 95.8% | 82.6% |
| 5020442 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.60 | 39.0 | 3.97e-01 | 97.9% | 67.4% |
| 3730875 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.59 | 45.0 | 4.53e-01 | 96.9% | 81.1% |
| 3222628 | 304.9.1.80 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF27577 | 0.57 | 37.0 | 3.19e-01 | 97.9% | 41.3% |
| 4951155 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.56 | 47.0 | 4.19e-01 | 97.9% | 63.6% |
| 3294459 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.55 | 46.0 | 4.51e-01 | 97.9% | 83.8% |
| 4888780 | 304.124.1.5 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss | 0.54 | 45.0 | 3.35e-01 | 100.0% | 36.3% |
| 4971582 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.54 | 40.0 | 3.74e-01 | 96.9% | 63.5% |
| 4027705 | 1.1.7.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Aquarius_N_2nd | 0.52 | 47.0 | 4.11e-01 | 100.0% | 71.0% |
D5
medium
residues 663-844
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00562.34 best | RNA_pol_Rpb2_6 | 63.8 | 2.20e-17 | 98.9% | 31.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7lb8B02 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.51 | 41.0 | 3.44e-01 | 85.7% | 90.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4888118 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.91 | 55.0 | 5.94e-01 | 93.4% | 69.4% |
| 4148017 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.85 | 71.0 | 6.62e-01 | 89.6% | 71.4% |
| 4655578 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.84 | 73.0 | 6.67e-01 | 90.1% | 72.2% |
| 4167437 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.79 | 57.0 | 5.58e-01 | 89.0% | 68.2% |