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LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00134
Bact-VirLD_Run2_08_scaffold_35_prodigal-single.1__X__X__00134
Identity
- Kingdom:
- phage
Quality
72.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-104
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rsmA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 48.0 | 4.53e-01 | 95.9% | 63.5% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.64 | 57.0 | 4.98e-01 | 99.0% | 79.3% |
| 4hbrA00 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 53.0 | 4.64e-01 | 89.8% | 81.4% |
| 6eufA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.62 | 47.0 | 3.33e-01 | 80.6% | 50.6% |
| 3bwsA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.61 | 47.0 | 3.22e-01 | 80.6% | 36.2% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.60 | 46.0 | 3.27e-01 | 80.6% | 39.0% |
| 3q6kA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.60 | 45.0 | 3.02e-01 | 78.6% | 57.4% |
| 1w0pA03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 48.0 | 3.83e-01 | 83.7% | 60.4% |
| 6nu7A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.60 | 48.0 | 3.36e-01 | 87.8% | 64.9% |
| 2vt8A00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.58 | 49.0 | 4.34e-01 | 92.9% | 76.9% |
| 1npeA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 45.0 | 3.35e-01 | 88.8% | 84.0% |
| 2ojhA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.55 | 44.0 | 3.22e-01 | 86.7% | 93.1% |
| 4nwyA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 46.0 | 4.19e-01 | 90.8% | 98.4% |
| 3wa2X01 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 37.0 | 3.93e-01 | 71.4% | 96.6% |
| 1st8A02 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.54 | 46.0 | 3.79e-01 | 98.0% | 70.5% |
| 1p32B00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.53 | 40.0 | 3.33e-01 | 87.8% | 45.0% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.52 | 40.0 | 3.96e-01 | 80.6% | 83.2% |
| 2joxA00 | 2.60.40.4240 | Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill | 0.52 | 35.0 | 3.50e-01 | 70.4% | 71.7% |
| 5hkeA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 39.0 | 2.78e-01 | 78.6% | 53.1% |
| 1t17A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 43.0 | 3.78e-01 | 99.0% | 62.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3233389 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.68 | 47.0 | 3.14e-01 | 71.4% | 25.1% |
| 5047657 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 38.0 | 4.76e-01 | 89.8% | 100.0% |
| 4940485 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.65 | 46.0 | 4.20e-01 | 72.4% | 76.0% |
| 5032759 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.64 | 37.0 | 3.95e-01 | 76.5% | 65.5% |
| 3232806 | 216.1.1.26 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › FmiP_Thoc5 | 0.61 | 44.0 | 3.82e-01 | 74.5% | 80.7% |
| 4098591 | 243.3.1.7 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Xylo_C | 0.61 | 49.0 | 4.93e-01 | 86.7% | 91.0% |
| 1100 | 10.1.1.32 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Sial-lect-inser | 0.60 | 48.0 | 3.77e-01 | 83.7% | 57.4% |
| 3795533 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 46.0 | 3.05e-01 | 81.6% | 41.3% |
| 4091216 | 3844.2.1.2 ↗ | a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 | 0.59 | 46.0 | 3.61e-01 | 82.7% | 66.8% |
| 3212817 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.59 | 45.0 | 3.95e-01 | 81.6% | 64.7% |
| 4229035 | 2484.1.1.12 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase | 0.59 | 44.0 | 3.51e-01 | 89.8% | 39.0% |
| 5063899 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 45.0 | 3.54e-01 | 89.8% | 37.7% |
| None | — | 0.58 | 43.0 | 3.97e-01 | 78.6% | 87.2% | |
| 3527683 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 47.0 | 3.12e-01 | 88.8% | 91.3% |
| 3278650 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 46.0 | 4.13e-01 | 98.0% | 61.4% |
| 4002532 | 5.1.2.30 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › RAB3GAP2_N | 0.57 | 41.0 | 3.53e-01 | 75.5% | 56.1% |
| 3848485 | 4.1.1.248 ↗ | beta barrels › SH3 › SH3 › SH3 › CABIT | 0.57 | 42.0 | 3.78e-01 | 77.6% | 88.9% |
| 3753034 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 46.0 | 3.06e-01 | 88.8% | 89.0% |
| 3819081 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.56 | 43.0 | 3.18e-01 | 85.7% | 42.0% |
| 3243080 | 243.5.1.0 ↗ | a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region | 0.56 | 42.0 | 4.19e-01 | 96.9% | 79.0% |
| 3833006 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.56 | 46.0 | 3.23e-01 | 89.8% | 71.3% |
| 3221722 | 3180.1.1.2 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › F-box | 0.55 | 44.0 | 3.76e-01 | 85.7% | 56.9% |
| 3670446 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 45.0 | 3.12e-01 | 87.8% | 92.8% |
| 3231582 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 41.0 | 3.41e-01 | 81.6% | 63.8% |
| 4003224 | 9.1.1.48 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 | 0.54 | 42.0 | 3.52e-01 | 84.7% | 53.3% |
| 3411264 | 5.1.3.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP | 0.54 | 44.0 | 2.95e-01 | 90.8% | 31.2% |
| 3964438 | 11.1.1.404 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4390 | 0.54 | 47.0 | 4.00e-01 | 98.0% | 65.7% |
| 4968734 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.54 | 43.0 | 3.43e-01 | 86.7% | 48.8% |
| None | — | 0.53 | 45.0 | 3.02e-01 | 94.9% | 62.3% | |
| None | — | 0.52 | 42.0 | 2.56e-01 | 86.7% | 19.5% | |
| 5034888 | 9.23.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 | 0.52 | 37.0 | 3.75e-01 | 83.7% | 75.0% |
| 3212280 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 45.0 | 3.01e-01 | 99.0% | 87.4% |
| 3516909 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 45.0 | 3.73e-01 | 98.0% | 57.1% |
| 3423894 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.51 | 41.0 | 3.31e-01 | 87.8% | 87.7% |
| 3349878 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.50 | 41.0 | 3.44e-01 | 91.8% | 60.9% |
| 3928712 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.50 | 44.0 | 3.27e-01 | 96.9% | 98.0% |
| 3991050 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.50 | 43.0 | 3.48e-01 | 93.9% | 49.5% |
D2
high
residues 117-168