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LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00168
Bact-VirLD_Run2_08_scaffold_35_prodigal-single.1__X__X__00168
Identity
- Kingdom:
- phage
Quality
87.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-186
Domain cluster:
rep: SRR1747065_scaffold_124_prodigal-single.1__X__X__00060__D9-190
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 27.0 | 4.25e-01 | 75.6% | 90.7% |
| 1wnhA01 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 28.0 | 3.65e-01 | 72.2% | 82.0% |
| 2cc3A00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.56 | 32.0 | 3.57e-01 | 100.0% | 69.4% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.56 | 40.0 | 3.89e-01 | 73.9% | 94.1% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.55 | 24.0 | 3.44e-01 | 78.9% | 88.6% |
| 3gwrB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 30.0 | 3.50e-01 | 99.4% | 77.2% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 33.0 | 3.70e-01 | 98.3% | 79.6% |
| 3gp6A00 | 2.40.160.20 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 36.0 | 3.83e-01 | 88.3% | 81.9% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 27.0 | 3.70e-01 | 97.8% | 97.9% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 32.0 | 3.56e-01 | 95.6% | 77.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3601493 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.68 | 37.0 | 2.69e-01 | 82.8% | 22.0% |
| 3283411 | 243.1.1.7 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N | 0.59 | 29.0 | 3.58e-01 | 76.1% | 72.7% |
| 3258377 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.57 | 28.0 | 3.95e-01 | 86.1% | 95.6% |
| 3214362 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.56 | 29.0 | 3.75e-01 | 98.9% | 88.0% |
| 3734040 | 243.1.1.78 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26534 | 0.56 | 33.0 | 3.67e-01 | 77.8% | 73.6% |