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LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00185
Bact-VirLD_Run2_08_scaffold_35_prodigal-single.1__X__X__00185
Identity
- Kingdom:
- phage
Quality
34.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 954-1053
Domain cluster:
rep: NC_049378.1__YP_009875985.1__HYP05_gp076__00076__D1-73
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lwjA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 51.0 | 4.08e-01 | 100.0% | 44.0% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 36.0 | 4.04e-01 | 76.0% | 81.6% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 36.0 | 4.09e-01 | 94.0% | 88.4% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.57 | 29.0 | 3.95e-01 | 90.0% | 100.0% |
| 3lsoA03 | 2.60.40.2260 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 48.0 | 4.17e-01 | 94.0% | 98.7% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.57 | 30.0 | 3.39e-01 | 95.0% | 64.6% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 47.0 | 4.46e-01 | 90.0% | 88.0% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.56 | 35.0 | 3.83e-01 | 97.0% | 79.5% |
| 2jpnA00 | 1.20.1280.210 | Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 | 0.56 | 36.0 | 3.99e-01 | 72.0% | 83.5% |
| 2xglA00 | 3.10.450.300 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein | 0.56 | 42.0 | 4.32e-01 | 81.0% | 90.1% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 38.0 | 3.80e-01 | 74.0% | 86.9% |
| 2dewX02 | 2.60.40.1700 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, central domain | 0.54 | 42.0 | 3.62e-01 | 83.0% | 99.4% |
| 4kt3B00 | 3.10.450.170 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens | 0.54 | 39.0 | 3.63e-01 | 76.0% | 87.5% |
| 4hsqA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 44.0 | 3.90e-01 | 89.0% | 96.5% |
| 2uytA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 47.0 | 3.60e-01 | 98.0% | 100.0% |
| 1vm6A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 40.0 | 4.36e-01 | 89.0% | 96.4% |
| 5z7qA00 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.52 | 45.0 | 3.79e-01 | 97.0% | 75.6% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.52 | 43.0 | 3.70e-01 | 92.0% | 58.4% |
| 1a90A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 37.0 | 3.69e-01 | 76.0% | 82.4% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 41.0 | 3.98e-01 | 92.0% | 87.4% |
| 2tprA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 36.0 | 3.42e-01 | 94.0% | 59.8% |
| 1tqgA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.51 | 43.0 | 4.26e-01 | 96.0% | 93.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995823 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.89 | 84.0 | 8.12e-01 | 100.0% | 92.7% |
| 3980756 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.88 | 70.0 | 6.93e-01 | 86.0% | 79.0% |
| 3949098 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.87 | 69.0 | 6.70e-01 | 86.0% | 75.5% |
| 4957559 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.86 | 72.0 | 7.21e-01 | 86.0% | 88.0% |
| 1518918 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.84 | 66.0 | 6.38e-01 | 86.0% | 74.1% |
| 3652636 | 101.1.1.295 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_70 | 0.68 | 43.0 | 4.72e-01 | 97.0% | 80.0% |
| 4986013 | 4994.1.1.0 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like | 0.68 | 47.0 | 5.06e-01 | 73.0% | 100.0% |
| 3628669 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.65 | 32.0 | 3.91e-01 | 99.0% | 72.3% |
| 3861070 | 4292.2.1.2 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B | 0.65 | 45.0 | 4.40e-01 | 73.0% | 65.5% |
| 5056927 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.65 | 56.0 | 4.46e-01 | 99.0% | 72.1% |
| 3596304 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.63 | 40.0 | 4.39e-01 | 71.0% | 80.0% |
| 3607719 | 633.24.1.0 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain | 0.63 | 44.0 | 4.72e-01 | 72.0% | 91.8% |
| 3865528 | 101.35.1.8 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › DUF4560 | 0.62 | 38.0 | 4.52e-01 | 99.0% | 100.0% |
| 3396462 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.61 | 32.0 | 3.87e-01 | 96.0% | 76.9% |
| 3967403 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.60 | 33.0 | 4.08e-01 | 96.0% | 84.6% |
| 3190774 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.60 | 52.0 | 4.18e-01 | 100.0% | 67.4% |
| 4156336 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.60 | 54.0 | 4.94e-01 | 100.0% | 99.2% |
| 5073637 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.59 | 32.0 | 3.02e-01 | 76.0% | 40.8% |
| 4990666 | 3781.2.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › ssDNA-binding protein ThermoDBP-related › ssDNA-binding protein ThermoDBP-related › ThermoDBP-RP_arch | 0.58 | 45.0 | 4.32e-01 | 97.0% | 70.8% |
| 3193851 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.58 | 43.0 | 2.83e-01 | 80.0% | 35.2% |
| 3787214 | 312.1.1.6 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 | 0.57 | 49.0 | 3.76e-01 | 95.0% | 71.1% |
| 3462000 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.55 | 41.0 | 3.60e-01 | 79.0% | 66.7% |
| 4932689 | 4010.1.1.1 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 | 0.54 | 39.0 | 2.89e-01 | 76.0% | 40.4% |
| 3944555 | 2008.1.1.103 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Transposase_31 | 0.53 | 38.0 | 3.39e-01 | 76.0% | 76.0% |
| 4149678 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 38.0 | 3.97e-01 | 75.0% | 94.4% |
| 3999750 | 109.4.1.27 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › W2 | 0.52 | 46.0 | 3.85e-01 | 97.0% | 62.5% |
| 3577899 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.51 | 46.0 | 3.44e-01 | 100.0% | 51.8% |
| 4010660 | 2008.1.1.103 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Transposase_31 | 0.51 | 36.0 | 3.29e-01 | 75.0% | 76.6% |
| 4282521 | 11.1.1.652 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ribophorin_II_3rd | 0.50 | 43.0 | 3.98e-01 | 97.0% | 96.3% |
D2
medium
residues 268-325
D3
medium
residues 384-482
D4
medium
residues 530-540_556-608