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LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00267
Bact-VirLD_Run2_08_scaffold_35_prodigal-single.1__X__X__00267
Identity
- Kingdom:
- phage
Quality
75.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-63
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.92 | 60.0 | 5.59e-01 | 100.0% | 56.2% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.88 | 57.0 | 3.71e-01 | 100.0% | 17.4% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.84 | 54.0 | 5.79e-01 | 100.0% | 78.4% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.82 | 54.0 | 5.53e-01 | 96.7% | 71.2% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.76 | 58.0 | 4.24e-01 | 83.6% | 32.5% |
| 1ez0B01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.74 | 43.0 | 2.65e-01 | 80.3% | 11.2% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.66 | 40.0 | 3.44e-01 | 93.4% | 40.0% |
| 1tmxB00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.65 | 41.0 | 2.64e-01 | 98.4% | 13.6% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.65 | 60.0 | 4.36e-01 | 100.0% | 39.9% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.64 | 49.0 | 3.26e-01 | 82.0% | 93.3% |
| 3t5tB01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.64 | 45.0 | 2.89e-01 | 75.4% | 16.4% |
| 3ihjA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 43.0 | 3.15e-01 | 98.4% | 24.9% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.60 | 44.0 | 3.65e-01 | 100.0% | 43.0% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.59 | 32.0 | 2.45e-01 | 95.1% | 20.3% |
| 1neiA00 | 3.30.160.220 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG | 0.58 | 45.0 | 4.59e-01 | 83.6% | 100.0% |
| 3s8mA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 44.0 | 2.76e-01 | 85.2% | 14.1% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 51.0 | 3.39e-01 | 96.7% | 68.9% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 37.0 | 2.76e-01 | 82.0% | 24.7% |
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.57 | 48.0 | 3.47e-01 | 98.4% | 75.0% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 41.0 | 3.10e-01 | 78.7% | 36.2% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 37.0 | 2.65e-01 | 70.5% | 29.2% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.55 | 41.0 | 3.14e-01 | 100.0% | 32.1% |
| 4lqxA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.54 | 41.0 | 2.59e-01 | 80.3% | 96.7% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.53 | 48.0 | 3.39e-01 | 98.4% | 61.8% |
| 1ciaA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.52 | 36.0 | 2.49e-01 | 73.8% | 87.8% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3902068 | 109.4.1.1369 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MA3, MIF4G | 0.88 | 58.0 | 3.25e-01 | 100.0% | 7.3% |
| 5078968 | 316.1.1.17 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol3_alpha | 0.88 | 62.0 | 3.97e-01 | 73.8% | 17.6% |
| 3315445 | 109.4.1.621 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_3 | 0.79 | 53.0 | 3.83e-01 | 70.5% | 25.9% |
| 3884389 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.78 | 53.0 | 3.83e-01 | 70.5% | 32.7% |
| 5064876 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.77 | 43.0 | 3.11e-01 | 77.0% | 22.6% |
| 4026624 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.73 | 54.0 | 4.49e-01 | 100.0% | 44.5% |
| 3827046 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.71 | 43.0 | 3.75e-01 | 78.7% | 42.2% |
| 4033776 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 61.0 | 5.05e-01 | 95.1% | 92.4% |
| 3999433 | 192.29.1.144 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SK_channel | 0.69 | 50.0 | 3.34e-01 | 77.0% | 27.2% |
| 3931081 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.68 | 64.0 | 4.77e-01 | 100.0% | 97.8% |
| 2141918 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.68 | 49.0 | 3.48e-01 | 77.0% | 28.5% |
| 3270655 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.66 | 52.0 | 3.35e-01 | 98.4% | 19.2% |
| 3939245 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.66 | 49.0 | 3.03e-01 | 78.7% | 62.5% |
| 5060285 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.65 | 44.0 | 2.91e-01 | 70.5% | 34.3% |
| 3056876 | 167.1.1.0 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 | 0.65 | 53.0 | 4.34e-01 | 96.7% | 49.1% |
| 2979134 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.65 | 53.0 | 4.34e-01 | 96.7% | 49.1% |
| 3089539 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.64 | 59.0 | 3.72e-01 | 100.0% | 32.0% |
| 3221071 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.64 | 47.0 | 2.92e-01 | 78.7% | 63.7% |
| 3882038 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.62 | 43.0 | 3.21e-01 | 72.1% | 66.5% |
| 4998031 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.62 | 43.0 | 3.04e-01 | 70.5% | 87.9% |
| 4268395 | 857.1.1.1 ↗ | a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA | 0.62 | 43.0 | 3.74e-01 | 72.1% | 84.3% |
| 3175336 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.62 | 43.0 | 3.97e-01 | 72.1% | 70.7% |
| 4149276 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.62 | 49.0 | 3.66e-01 | 96.7% | 32.7% |
| 3880867 | 2484.1.1.145 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_7 | 0.61 | 48.0 | 3.00e-01 | 93.4% | 18.0% |
| 3798829 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 50.0 | 3.43e-01 | 95.1% | 36.0% |
| 3580410 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.60 | 54.0 | 4.19e-01 | 100.0% | 56.2% |
| 3933447 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.59 | 42.0 | 3.49e-01 | 73.8% | 50.5% |
| 3215753 | 3226.1.1.1 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease | 0.59 | 51.0 | 3.01e-01 | 100.0% | 39.4% |
| 3627712 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.58 | 50.0 | 2.87e-01 | 96.7% | 10.9% |
| 3509080 | 2484.8.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) | 0.58 | 51.0 | 3.42e-01 | 96.7% | 28.4% |
| 4976887 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.58 | 49.0 | 3.22e-01 | 91.8% | 63.5% |
| 3224269 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.58 | 47.0 | 2.94e-01 | 91.8% | 22.8% |
| 5075111 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.58 | 50.0 | 3.87e-01 | 98.4% | 77.1% |
| 4000800 | 109.10.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin | 0.58 | 51.0 | 3.70e-01 | 100.0% | 60.6% |
| 4991377 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.58 | 52.0 | 3.33e-01 | 100.0% | 23.1% |
| 3649913 | 5050.1.1.58 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C | 0.57 | 46.0 | 3.46e-01 | 95.1% | 83.5% |
| 3994884 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.57 | 47.0 | 3.07e-01 | 95.1% | 47.4% |
| 3630469 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 47.0 | 2.96e-01 | 91.8% | 35.1% |
| 3494833 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 49.0 | 2.88e-01 | 95.1% | 35.3% |
| 3499344 | 3914.1.1.2 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer | 0.56 | 45.0 | 2.59e-01 | 96.7% | 65.5% |
| 5018200 | 2004.1.1.220 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 | 0.55 | 45.0 | 2.73e-01 | 98.4% | 39.8% |
| 3636918 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.54 | 44.0 | 2.99e-01 | 91.8% | 93.8% |
| 3708645 | 230.4.1.0 ↗ | a+b two layers › T-fold › ApbE-like › ApbE-like | 0.52 | 41.0 | 3.43e-01 | 85.2% | 53.3% |
| 4975569 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 36.0 | 2.88e-01 | 73.8% | 42.4% |
| 4505972 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 43.0 | 2.72e-01 | 91.8% | 30.3% |