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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00006
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00006
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 97-204
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_193576_prodigal-single.1__X__X__00294__D106-220
D2
medium
residues 17-63
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wevA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.78 | 52.0 | 4.73e-01 | 70.2% | 67.2% |
| 2q2rA02 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.71 | 45.0 | 2.95e-01 | 91.5% | 14.8% |
| 4mtdA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.69 | 48.0 | 4.32e-01 | 72.3% | 85.7% |
| 2ds5A00 | 6.20.220.10 | Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain | 0.67 | 51.0 | 5.31e-01 | 83.0% | 95.3% |
| 3alfA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.66 | 34.0 | 2.95e-01 | 70.2% | 30.0% |
| 2fe3A02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.65 | 44.0 | 4.14e-01 | 70.2% | 93.0% |
| 4ohfA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.64 | 36.0 | 2.35e-01 | 78.7% | 13.1% |
| 2ecjA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.64 | 47.0 | 4.38e-01 | 78.7% | 63.8% |
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.62 | 52.0 | 5.39e-01 | 93.6% | 95.6% |
| 3mwmA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.60 | 36.0 | 3.50e-01 | 83.0% | 55.8% |
| 4iduB01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.59 | 46.0 | 3.36e-01 | 83.0% | 76.4% |
| 1v6gA00 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.57 | 47.0 | 3.99e-01 | 95.7% | 74.1% |
| 2dlqA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.55 | 33.0 | 3.64e-01 | 70.2% | 96.4% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.55 | 44.0 | 4.06e-01 | 91.5% | 98.4% |
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.54 | 43.0 | 3.67e-01 | 91.5% | 53.2% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 36.0 | 3.49e-01 | 76.6% | 85.7% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.50 | 35.0 | 3.70e-01 | 76.6% | 83.7% |
| 7w42B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 38.0 | 2.60e-01 | 83.0% | 80.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004690 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 50.0 | 5.68e-01 | 74.5% | 91.4% |
| 5050300 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 51.0 | 5.56e-01 | 70.2% | 97.1% |
| 5004198 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.75 | 49.0 | 5.48e-01 | 74.5% | 91.4% |
| 3197786 | 376.1.3.75 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_Tbcl_Rhp7 | 0.72 | 64.0 | 6.27e-01 | 100.0% | 98.0% |
| 3697191 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.70 | 49.0 | 5.68e-01 | 74.5% | 100.0% |
| 4224305 | 377.1.1.5 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM | 0.66 | 47.0 | 5.38e-01 | 76.6% | 97.1% |
| 5018523 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.62 | 52.0 | 4.58e-01 | 93.6% | 62.9% |
| 5013364 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 44.0 | 4.52e-01 | 76.6% | 88.9% |
| 5078006 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.59 | 52.0 | 4.51e-01 | 95.7% | 100.0% |
| 3175455 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 48.0 | 2.89e-01 | 100.0% | 87.7% |
| 3493330 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.55 | 44.0 | 3.54e-01 | 91.5% | 45.6% |
| 3715868 | 375.10.1.2 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE | 0.55 | 46.0 | 4.21e-01 | 91.5% | 78.3% |
| 4669573 | 4987.1.1.1 ↗ | few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal_L31 | 0.54 | 43.0 | 4.01e-01 | 100.0% | 72.3% |
| 3855126 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.53 | 37.0 | 3.96e-01 | 76.6% | 97.1% |
| 3535861 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.52 | 37.0 | 3.26e-01 | 78.7% | 53.3% |
| 3693975 | 186.2.1.1 ↗ | alpha arrays › lambda integrase-N-like › VEFS domain › VEFS domain › VEFS-Box | 0.51 | 42.0 | 3.09e-01 | 100.0% | 33.1% |