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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00016
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00016
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-128
Domain cluster:
rep: LC554890.1__BCG50042.1__X__00024__D127-241
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w9mB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.82 | 57.0 | 6.62e-01 | 92.9% | 98.8% |
| 3b0xA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.80 | 68.0 | 7.06e-01 | 100.0% | 97.1% |
| 3oguA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.77 | 70.0 | 6.86e-01 | 99.1% | 99.2% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.75 | 64.0 | 6.45e-01 | 91.2% | 100.0% |
| 4xq7A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.75 | 66.0 | 5.90e-01 | 94.7% | 84.0% |
| 2bcqA03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.73 | 67.0 | 6.57e-01 | 100.0% | 97.6% |
| 3h37A01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.73 | 62.0 | 5.66e-01 | 97.3% | 70.3% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.72 | 63.0 | 6.28e-01 | 92.9% | 99.1% |
| 8an5A01 | 3.30.460.40 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.71 | 64.0 | 5.31e-01 | 96.5% | 68.8% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.71 | 65.0 | 6.30e-01 | 100.0% | 92.8% |
| 2b4vA02 | 3.30.460.50 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.71 | 59.0 | 5.80e-01 | 88.5% | 100.0% |
| 1r89A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.70 | 65.0 | 6.26e-01 | 100.0% | 90.6% |
| 2nrkA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.70 | 61.0 | 5.39e-01 | 100.0% | 66.1% |
| 4zrlA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.69 | 63.0 | 6.23e-01 | 99.1% | 94.9% |
| 7x4qA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.68 | 62.0 | 5.59e-01 | 99.1% | 98.7% |
| 7x4pA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 58.0 | 5.21e-01 | 96.5% | 98.1% |
| 3iuzA00 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.64 | 56.0 | 4.08e-01 | 98.2% | 82.5% |
| 1vj7B02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.63 | 54.0 | 5.30e-01 | 91.2% | 91.6% |
| 1ylqA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 44.0 | 4.73e-01 | 96.5% | 92.5% |
| 4ebjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.56 | 51.0 | 4.93e-01 | 100.0% | 97.7% |
| 5b3pA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.56 | 44.0 | 4.16e-01 | 85.8% | 70.1% |
| 1kw3B02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 43.0 | 3.88e-01 | 81.4% | 90.9% |
| 4jhyA00 | 3.30.530.80 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › | 0.56 | 41.0 | 3.72e-01 | 95.6% | 56.4% |
| 3cslA01 | 2.170.130.10 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain | 0.53 | 33.0 | 3.22e-01 | 80.5% | 53.9% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.52 | 39.0 | 3.68e-01 | 95.6% | 64.3% |
| 3sqfA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 35.0 | 3.78e-01 | 94.7% | 84.2% |
| 4hrzB00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 42.0 | 4.11e-01 | 90.3% | 84.6% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4316524 | 316.1.1.4 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2,DNA_pol_B_thumb | 0.78 | 72.0 | 5.76e-01 | 100.0% | 69.3% |
| 3172392 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.77 | 70.0 | 5.34e-01 | 100.0% | 75.3% |
| 151074 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.76 | 70.0 | 5.74e-01 | 100.0% | 62.8% |
| 3696734 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.76 | 70.0 | 5.35e-01 | 100.0% | 46.9% |
| 3726426 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.74 | 68.0 | 5.51e-01 | 100.0% | 58.6% |
| 4583055 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.74 | 63.0 | 5.59e-01 | 100.0% | 64.4% |
| 3633420 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.74 | 68.0 | 5.38e-01 | 100.0% | 64.1% |
| 3855748 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.73 | 67.0 | 5.47e-01 | 100.0% | 59.1% |
| 5000351 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.72 | 67.0 | 5.79e-01 | 100.0% | 75.9% |
| 3608603 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.72 | 66.0 | 5.72e-01 | 100.0% | 77.6% |
| 4948009 | 316.1.1.81 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › tRNA_NucTransf2 | 0.72 | 67.0 | 6.04e-01 | 100.0% | 83.3% |
| 4944346 | 316.1.1.81 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › tRNA_NucTransf2 | 0.71 | 66.0 | 6.10e-01 | 100.0% | 93.6% |
| 4152179 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.71 | 66.0 | 5.94e-01 | 100.0% | 82.7% |
| 4944306 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.71 | 65.0 | 5.53e-01 | 98.2% | 68.0% |
| 3276647 | 316.1.1.24 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DNA_pol_B_thumb,DNA_pol_B_palm | 0.71 | 65.0 | 5.42e-01 | 100.0% | 61.9% |
| 150565 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.71 | 63.0 | 5.81e-01 | 100.0% | 76.8% |
| 3608688 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.70 | 63.0 | 5.61e-01 | 100.0% | 76.4% |
| 3640795 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.70 | 63.0 | 5.08e-01 | 98.2% | 56.3% |
| 3597288 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.70 | 62.0 | 6.05e-01 | 97.3% | 100.0% |
| 3596720 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.70 | 64.0 | 5.95e-01 | 100.0% | 90.7% |
| 3709581 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.70 | 64.0 | 5.43e-01 | 100.0% | 70.6% |
| 4998245 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.69 | 63.0 | 5.61e-01 | 99.1% | 71.6% |
| 5080884 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.69 | 63.0 | 4.87e-01 | 100.0% | 63.4% |
| 5055016 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 61.0 | 4.99e-01 | 97.3% | 69.8% |
| 3723794 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 61.0 | 4.76e-01 | 96.5% | 71.3% |
| 3721514 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.68 | 62.0 | 4.91e-01 | 100.0% | 98.2% |
| 4969949 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.67 | 61.0 | 5.04e-01 | 98.2% | 70.3% |
| 3705091 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.67 | 59.0 | 5.81e-01 | 95.6% | 99.2% |
| 3520245 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.66 | 60.0 | 5.18e-01 | 100.0% | 90.3% |
| 5040839 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.66 | 60.0 | 5.15e-01 | 97.3% | 71.8% |
| 4993093 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.66 | 59.0 | 4.28e-01 | 100.0% | 46.6% |
| 5069234 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.65 | 59.0 | 5.12e-01 | 99.1% | 71.7% |
| 4992411 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.64 | 57.0 | 4.97e-01 | 96.5% | 68.8% |
| 5052912 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.64 | 53.0 | 4.98e-01 | 100.0% | 72.9% |
| 3272765 | 809.1.1.0 ↗ | a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP | 0.63 | 46.0 | 4.96e-01 | 93.8% | 90.5% |
| 3738504 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.60 | 38.0 | 3.89e-01 | 73.5% | 65.5% |
| 4261005 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.56 | 48.0 | 3.66e-01 | 94.7% | 82.3% |
| 4341395 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 47.0 | 4.33e-01 | 97.3% | 98.1% |
| 3963078 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.55 | 36.0 | 4.07e-01 | 88.5% | 90.6% |
| 3398504 | 11.1.1.588 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fibulin_C | 0.54 | 38.0 | 3.62e-01 | 70.8% | 96.2% |
| 5064859 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.53 | 44.0 | 3.48e-01 | 91.2% | 97.5% |
| 3854465 | 283.2.1.8 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 | 0.52 | 43.0 | 4.28e-01 | 92.9% | 85.0% |
| 1567474 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.52 | 44.0 | 3.40e-01 | 93.8% | 63.6% |
| 3629934 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 32.0 | 2.98e-01 | 87.6% | 48.3% |
| 3183677 | 523.1.1.3 ↗ | a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 | 0.50 | 40.0 | 4.06e-01 | 88.5% | 86.4% |
D2
medium
residues 138-295
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.64 | 24.0 | 3.15e-01 | 82.9% | 57.3% |
| 4mtnA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.60 | 33.0 | 4.09e-01 | 73.4% | 87.4% |
| 5jd5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 41.0 | 3.30e-01 | 88.0% | 79.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3820829 | 5.1.5.66 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 | 0.54 | 41.0 | 3.31e-01 | 77.8% | 80.0% |
| 3970048 | 4292.2.1.0 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain | 0.53 | 28.0 | 3.71e-01 | 83.5% | 98.7% |
| 3743129 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.53 | 26.0 | 3.08e-01 | 98.1% | 66.7% |
| 3903931 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.52 | 39.0 | 3.15e-01 | 77.8% | 94.4% |
| 2702181 | 5.1.4.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ,PQQ_2 | 0.51 | 45.0 | 3.30e-01 | 97.5% | 77.3% |
| 3364229 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.50 | 39.0 | 3.19e-01 | 82.3% | 74.7% |