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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00025
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00025
Identity
- Kingdom:
- phage
Quality
52.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 102-330
Domain cluster:
rep: Mad1_20_16_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00715__D175-195_213-391_406-421
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xfaA04 | 1.20.1440.230 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain | 0.64 | 25.0 | 3.95e-01 | 93.4% | 92.9% |
| 1szhA02 | 1.10.150.370 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain | 0.62 | 22.0 | 3.52e-01 | 79.0% | 82.9% |
| 3u5wA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 31.0 | 4.07e-01 | 100.0% | 88.1% |
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.59 | 23.0 | 3.77e-01 | 94.3% | 100.0% |
| 1ao5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 26.0 | 3.40e-01 | 99.6% | 86.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942828 | 1.1.13.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 | 0.68 | 42.0 | 5.23e-01 | 99.1% | 97.9% |
| 3964955 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.60 | 42.0 | 4.92e-01 | 98.7% | 100.0% |
| 4075020 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.58 | 27.0 | 3.41e-01 | 89.1% | 70.3% |
| 3906133 | 633.21.1.4 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › Cg6151-P | 0.56 | 29.0 | 4.04e-01 | 93.9% | 99.1% |
| 3876932 | 592.3.1.8 ↗ | alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › PF31020 | 0.56 | 27.0 | 3.82e-01 | 95.6% | 96.2% |
| 3521510 | 192.7.1.73 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › PF31020 | 0.56 | 26.0 | 3.70e-01 | 95.2% | 90.9% |
| 3908483 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.54 | 31.0 | 3.87e-01 | 93.4% | 89.7% |
| 3958940 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.54 | 28.0 | 3.46e-01 | 95.2% | 77.2% |
| 3868848 | 601.1.2.47 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › MARVEL | 0.53 | 30.0 | 3.94e-01 | 93.4% | 98.5% |
D2
medium
residues 401-443_461-487