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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00067
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00067
Identity
- Kingdom:
- phage
Quality
63.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 62-222
Domain cluster:
rep: SRR1747023_scaffold_5_prodigal-single.1__X__X__00146__D102-245
D2
medium
residues 223-320
Domain cluster:
rep: CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00298__D743-827
D3
medium
residues 321-386
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h09B02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.67 | 57.0 | 3.48e-01 | 100.0% | 15.9% |
| 5gkdA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.67 | 57.0 | 3.84e-01 | 100.0% | 44.6% |
| 2vtfA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 48.0 | 3.15e-01 | 93.9% | 65.5% |
| 5d6nA00 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 44.0 | 2.74e-01 | 92.4% | 62.7% |
| 1ig3A02 | 3.40.50.10240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain | 0.54 | 43.0 | 3.40e-01 | 89.4% | 49.7% |
| 2x5oA03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.52 | 44.0 | 3.58e-01 | 100.0% | 50.4% |
| 3q2iA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 44.0 | 3.40e-01 | 100.0% | 67.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3391275 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.80 | 72.0 | 6.03e-01 | 100.0% | 61.0% |
| 4643528 | 208.2.1.11 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Adhesin YadA, collagen-binding domain › Adhesin YadA, collagen-binding domain › Ice_nucleation | 0.76 | 66.0 | 5.54e-01 | 100.0% | 57.3% |
| 3187916 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.73 | 65.0 | 4.47e-01 | 100.0% | 38.6% |
| 5041137 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.72 | 60.0 | 5.98e-01 | 95.5% | 95.7% |
| 4493843 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.71 | 60.0 | 5.19e-01 | 95.5% | 66.7% |
| 3203125 | 207.2.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 | 0.68 | 58.0 | 3.45e-01 | 100.0% | 19.3% |
| 3575994 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.64 | 54.0 | 5.21e-01 | 92.4% | 94.7% |
| 3421120 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.62 | 52.0 | 3.81e-01 | 100.0% | 55.6% |
| 4461157 | 1160.1.1.1 ↗ | beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N | 0.56 | 48.0 | 3.70e-01 | 100.0% | 55.0% |
D4
medium
residues 660-749