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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00090
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00090
Identity
- Kingdom:
- phage
Quality
74.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-63
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5d1oA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.74 | 60.0 | 5.23e-01 | 91.5% | 65.8% |
| 2x9zA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.74 | 63.0 | 4.70e-01 | 93.6% | 39.8% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 59.0 | 4.74e-01 | 93.6% | 59.1% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.70 | 57.0 | 4.60e-01 | 97.9% | 46.3% |
| 3x17A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 58.0 | 4.54e-01 | 93.6% | 53.9% |
| 5eo9B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 56.0 | 4.30e-01 | 93.6% | 54.5% |
| 3eqvA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.67 | 48.0 | 3.51e-01 | 78.7% | 45.9% |
| 3ec8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.65 | 55.0 | 4.01e-01 | 100.0% | 37.4% |
| 4i0kA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 54.0 | 4.22e-01 | 95.7% | 63.8% |
| 6x4tA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 53.0 | 4.09e-01 | 95.7% | 61.7% |
| 1t4aA00 | 3.30.1280.10 | Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS | 0.64 | 48.0 | 4.21e-01 | 87.2% | 100.0% |
| 5eiqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 52.0 | 4.29e-01 | 97.9% | 53.8% |
| 3afhA02 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.62 | 54.0 | 4.19e-01 | 100.0% | 65.4% |
| 3d33A00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 50.0 | 4.14e-01 | 95.7% | 51.1% |
| 4dipH00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 49.0 | 3.64e-01 | 87.2% | 68.1% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 48.0 | 3.50e-01 | 91.5% | 55.3% |
| 3m1cA04 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.60 | 48.0 | 3.61e-01 | 95.7% | 84.1% |
| 2wanA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 50.0 | 3.97e-01 | 100.0% | 52.0% |
| 4kq7A01 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.59 | 49.0 | 3.46e-01 | 97.9% | 44.4% |
| 4j3vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 46.0 | 3.69e-01 | 91.5% | 45.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.59 | 47.0 | 4.34e-01 | 97.9% | 74.2% |
| 2r5oA01 | 2.70.50.60 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain | 0.58 | 49.0 | 3.52e-01 | 100.0% | 46.4% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 46.0 | 3.44e-01 | 95.7% | 46.1% |
| 4jysB00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 45.0 | 3.56e-01 | 91.5% | 68.4% |
| 6jkvA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.57 | 45.0 | 3.04e-01 | 100.0% | 84.3% |
| 4dj3B01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 47.0 | 3.64e-01 | 95.7% | 90.1% |
| 4kq7A02 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.56 | 45.0 | 3.08e-01 | 97.9% | 59.7% |
| 3p1vA01 | 2.60.40.3250 | Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain | 0.56 | 45.0 | 3.34e-01 | 95.7% | 47.1% |
| 1ktbA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 40.0 | 3.47e-01 | 93.6% | 46.2% |
| 1w5dA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 43.0 | 2.75e-01 | 89.4% | 82.0% |
| 3oqgA00 | 3.40.1440.50 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › | 0.54 | 39.0 | 2.94e-01 | 95.7% | 39.8% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.54 | 43.0 | 3.74e-01 | 97.9% | 91.7% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 45.0 | 3.29e-01 | 91.5% | 63.6% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 41.0 | 3.07e-01 | 97.9% | 41.4% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 45.0 | 2.83e-01 | 93.6% | 83.6% |
| 3eb7A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 41.0 | 3.01e-01 | 97.9% | 88.4% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.53 | 44.0 | 3.84e-01 | 100.0% | 65.4% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 45.0 | 3.37e-01 | 91.5% | 65.4% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 43.0 | 2.77e-01 | 93.6% | 87.9% |
| 5hsqA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 45.0 | 3.22e-01 | 93.6% | 64.3% |
| 2hevF00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 39.0 | 3.09e-01 | 93.6% | 35.7% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 43.0 | 3.22e-01 | 91.5% | 62.7% |
| 2kr7A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.52 | 41.0 | 3.46e-01 | 97.9% | 87.2% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 41.0 | 2.63e-01 | 100.0% | 90.3% |
| 4dmiA02 | 2.60.120.1010 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 38.0 | 2.95e-01 | 93.6% | 45.3% |
| 2qh7B01 | 3.40.5.90 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › CDGSH iron-sulfur domain, mitoNEET-type | 0.51 | 36.0 | 3.68e-01 | 93.6% | 85.1% |
| 1yi9A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 40.0 | 3.05e-01 | 100.0% | 66.4% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3483496 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.76 | 62.0 | 6.34e-01 | 97.9% | 93.3% |
| 5020888 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.71 | 62.0 | 4.55e-01 | 97.9% | 44.2% |
| 3932124 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.70 | 55.0 | 3.43e-01 | 95.7% | 16.0% |
| 3600334 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.69 | 60.0 | 4.85e-01 | 97.9% | 52.2% |
| 3176986 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.69 | 59.0 | 4.91e-01 | 100.0% | 56.5% |
| 3935405 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.69 | 57.0 | 4.75e-01 | 100.0% | 54.4% |
| 5067737 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.68 | 56.0 | 4.64e-01 | 95.7% | 50.6% |
| 3216926 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 59.0 | 4.18e-01 | 100.0% | 41.3% |
| 5059717 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.68 | 57.0 | 4.56e-01 | 95.7% | 50.5% |
| 3224294 | 5050.1.1.32 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn | 0.68 | 51.0 | 2.92e-01 | 95.7% | 7.8% |
| 3778547 | 11.1.1.657 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › VWA7_4 | 0.67 | 57.0 | 3.99e-01 | 97.9% | 39.4% |
| 5036988 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 56.0 | 4.35e-01 | 95.7% | 47.6% |
| 3494105 | 221.1.1.64 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N | 0.66 | 56.0 | 4.71e-01 | 95.7% | 61.3% |
| 3545416 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 53.0 | 4.45e-01 | 95.7% | 51.8% |
| 5032966 | 284.1.1.1 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C | 0.64 | 51.0 | 3.84e-01 | 87.2% | 83.5% |
| 3858274 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.64 | 53.0 | 4.17e-01 | 95.7% | 45.7% |
| 3437270 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 51.0 | 4.55e-01 | 97.9% | 62.9% |
| 3687932 | 708.1.2.3 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › Yippee-Mis18 | 0.63 | 55.0 | 4.14e-01 | 100.0% | 98.3% |
| 3496141 | 4004.1.1.4 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › CERK_C | 0.63 | 51.0 | 3.52e-01 | 97.9% | 95.3% |
| 3633409 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.62 | 49.0 | 4.15e-01 | 91.5% | 51.2% |
| 4024040 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.61 | 49.0 | 4.58e-01 | 100.0% | 76.9% |
| 4466626 | 10.32.1.244 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 | 0.61 | 49.0 | 3.81e-01 | 93.6% | 44.5% |
| 3756826 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.61 | 49.0 | 3.52e-01 | 95.7% | 31.0% |
| 3977310 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 50.0 | 3.70e-01 | 91.5% | 65.0% |
| 4340143 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.60 | 47.0 | 4.29e-01 | 93.6% | 92.8% |
| 4945987 | 284.1.1.32 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP26_IF | 0.60 | 49.0 | 3.84e-01 | 89.4% | 83.8% |
| 3213885 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 49.0 | 3.84e-01 | 95.7% | 60.0% |
| 1070876 | 10.2.1.89 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 | 0.59 | 49.0 | 3.45e-01 | 97.9% | 44.2% |
| 4948028 | 284.1.1.32 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP26_IF | 0.59 | 46.0 | 3.69e-01 | 89.4% | 83.8% |
| 3243381 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.59 | 48.0 | 3.46e-01 | 97.9% | 32.9% |
| 3244813 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 48.0 | 3.51e-01 | 95.7% | 46.7% |
| 3594601 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 44.0 | 3.71e-01 | 93.6% | 90.0% |
| 4065108 | 284.3.1.1 ↗ | a+b two layers › FKBP-like › Colicin E3 immunity protein › Colicin E3 immunity protein › Cloacin_immun | 0.56 | 46.0 | 3.92e-01 | 95.7% | 90.6% |
| 5046495 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 45.0 | 3.46e-01 | 89.4% | 55.0% |
| 3525968 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.53 | 41.0 | 3.42e-01 | 100.0% | 61.0% |
| 5009883 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 42.0 | 3.05e-01 | 100.0% | 94.4% |
| 223777 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.52 | 44.0 | 3.87e-01 | 100.0% | 68.0% |
| 3631387 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 44.0 | 3.83e-01 | 93.6% | 70.0% |
| 3170078 | 11.1.1.646 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRP_N | 0.52 | 39.0 | 3.11e-01 | 100.0% | 58.5% |
| 4382604 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 42.0 | 3.25e-01 | 91.5% | 55.2% |