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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00120
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00120
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-112
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00119__D20-104
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eqkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 37.0 | 4.47e-01 | 90.0% | 76.7% |
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 37.0 | 4.80e-01 | 100.0% | 93.3% |
| 3h6zA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 40.0 | 3.99e-01 | 88.2% | 56.2% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 34.0 | 4.00e-01 | 90.0% | 67.5% |
| 4dq2A03 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 30.0 | 4.31e-01 | 85.5% | 97.9% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 34.0 | 4.19e-01 | 98.2% | 79.4% |
| 1vwxM01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 34.0 | 3.87e-01 | 100.0% | 65.9% |
| 3pieB05 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 36.0 | 4.56e-01 | 100.0% | 100.0% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 38.0 | 4.69e-01 | 97.3% | 100.0% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 37.0 | 3.89e-01 | 100.0% | 66.0% |
| 1ub4A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 43.0 | 4.41e-01 | 97.3% | 79.6% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 36.0 | 3.93e-01 | 100.0% | 72.3% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 36.0 | 4.27e-01 | 100.0% | 93.2% |
| 3mcaA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 37.0 | 3.88e-01 | 97.3% | 73.5% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 38.0 | 3.70e-01 | 85.5% | 66.4% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.54 | 30.0 | 3.91e-01 | 100.0% | 98.4% |
| 2evrA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 32.0 | 3.81e-01 | 85.5% | 87.8% |
| 1zunB03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 37.0 | 3.81e-01 | 97.3% | 75.5% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 36.0 | 3.65e-01 | 70.9% | 80.2% |
| 3p26A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 39.0 | 3.91e-01 | 98.2% | 77.3% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.51 | 37.0 | 4.00e-01 | 88.2% | 88.0% |
| 2qf4A02 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.50 | 35.0 | 3.81e-01 | 70.9% | 98.9% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4125814 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.78 | 36.0 | 4.36e-01 | 88.2% | 66.7% |
| 3264806 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 36.0 | 5.29e-01 | 98.2% | 100.0% |
| 3561707 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.77 | 40.0 | 4.18e-01 | 90.0% | 56.0% |
| 3801791 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 38.0 | 4.94e-01 | 90.0% | 83.1% |
| 3429682 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 37.0 | 4.45e-01 | 99.1% | 69.3% |
| 3389311 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 38.0 | 4.06e-01 | 89.1% | 54.0% |
| 3465976 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 37.0 | 4.79e-01 | 89.1% | 81.5% |
| 3815480 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 37.0 | 4.74e-01 | 89.1% | 81.5% |
| 3393297 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.74 | 38.0 | 4.45e-01 | 90.0% | 68.8% |
| 3815479 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 38.0 | 4.54e-01 | 90.0% | 73.3% |
| 3614414 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 36.0 | 4.77e-01 | 87.3% | 87.9% |
| 3393360 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.73 | 37.0 | 3.69e-01 | 90.0% | 47.0% |
| 3621818 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.73 | 34.0 | 4.87e-01 | 86.4% | 98.0% |
| 3592540 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 38.0 | 4.97e-01 | 97.3% | 91.7% |
| 3612184 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 36.0 | 4.81e-01 | 99.1% | 88.3% |
| 3936430 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 37.0 | 4.29e-01 | 90.0% | 67.5% |
| 3304602 | 4.1.1.427 ↗ | beta barrels › SH3 › SH3 › SH3 › F-box | 0.73 | 37.0 | 3.99e-01 | 90.9% | 56.8% |
| 5069810 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.73 | 38.0 | 4.42e-01 | 97.3% | 70.0% |
| 3707347 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 36.0 | 4.96e-01 | 100.0% | 96.4% |
| 3662072 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 37.0 | 3.60e-01 | 90.0% | 45.0% |
| 3622055 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.72 | 36.0 | 4.08e-01 | 89.1% | 62.4% |
| 4518787 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.72 | 35.0 | 4.27e-01 | 90.0% | 70.7% |
| 3463181 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 37.0 | 4.50e-01 | 90.0% | 77.1% |
| 3832128 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 38.0 | 4.05e-01 | 91.8% | 58.9% |
| 3340900 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 36.0 | 4.61e-01 | 90.0% | 83.1% |
| 3993250 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.71 | 34.0 | 4.71e-01 | 100.0% | 92.7% |
| 3706998 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 37.0 | 4.85e-01 | 100.0% | 91.7% |
| 3326132 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 36.0 | 4.52e-01 | 90.0% | 81.5% |
| 3828348 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 36.0 | 4.56e-01 | 90.0% | 83.1% |
| 3452043 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 36.0 | 3.39e-01 | 90.0% | 40.0% |
| 5079674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.70 | 34.0 | 4.03e-01 | 88.2% | 66.7% |
| 3926207 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 35.0 | 4.93e-01 | 84.5% | 100.0% |
| 3684646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 38.0 | 4.37e-01 | 100.0% | 72.5% |
| 3774108 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.70 | 35.0 | 3.82e-01 | 90.0% | 56.8% |
| 3911241 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.69 | 36.0 | 3.83e-01 | 90.9% | 56.0% |
| 3577505 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 36.0 | 4.02e-01 | 90.0% | 64.7% |
| 4668791 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.66 | 36.0 | 3.76e-01 | 99.1% | 57.1% |
| 3467678 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 36.0 | 3.63e-01 | 91.8% | 52.7% |
| 3989485 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.65 | 31.0 | 4.35e-01 | 85.5% | 100.0% |
| 161224 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.64 | 38.0 | 3.98e-01 | 98.2% | 64.0% |
| 4945827 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.64 | 37.0 | 4.12e-01 | 99.1% | 71.1% |
| 4952455 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.64 | 37.0 | 4.14e-01 | 99.1% | 71.9% |
| 3599398 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.63 | 38.0 | 3.98e-01 | 100.0% | 66.0% |
| 5029405 | 4.17.1.1 ↗ | beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N | 0.62 | 30.0 | 4.01e-01 | 85.5% | 90.9% |
| 1171020 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.62 | 37.0 | 3.94e-01 | 99.1% | 67.7% |
| 4514948 | 1.1.8.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB | 0.61 | 35.0 | 3.81e-01 | 99.1% | 66.3% |
| 5001596 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.61 | 36.0 | 3.93e-01 | 100.0% | 71.1% |
| 3448327 | 4.1.1.150 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3123 | 0.61 | 37.0 | 4.53e-01 | 100.0% | 95.7% |
| 4060488 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.60 | 37.0 | 4.35e-01 | 100.0% | 86.3% |
| 3822850 | 1.1.8.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C | 0.60 | 37.0 | 3.90e-01 | 99.1% | 69.0% |
| 4023315 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.59 | 38.0 | 4.23e-01 | 89.1% | 81.1% |
| 4883586 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 37.0 | 4.14e-01 | 100.0% | 83.7% |
| 3828371 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.57 | 39.0 | 4.42e-01 | 95.5% | 91.8% |
| 3642150 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 35.0 | 3.81e-01 | 100.0% | 72.6% |
| 3373298 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.56 | 36.0 | 2.82e-01 | 94.5% | 30.4% |
| 4072878 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.55 | 36.0 | 4.18e-01 | 100.0% | 91.3% |
| 4030664 | 9.2.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin | 0.53 | 47.0 | 4.08e-01 | 99.1% | 94.9% |
| 3697981 | 220.1.1.36 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 | 0.51 | 40.0 | 3.35e-01 | 86.4% | 54.1% |