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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00127

Bact-Vir

LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00127

Identity

Kingdom:
phage

Quality

72.7 mean pLDDT

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 102-259
PDB
Domain cluster: rep: OM362522.1__UPO38812.1__GHSM17_11__00011__D182-363
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00959.25 best Phage_lysozyme 56.8 4.00e-15 89.9% 84.8%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.85 74.0 7.68e-01 100.0% 97.3%
2anvA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 73.0 7.61e-01 100.0% 98.6%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 74.0 7.31e-01 99.4% 89.0%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.82 48.0 6.14e-01 89.2% 95.9%
8hp8A01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 68.0 6.93e-01 97.5% 91.5%
8b2sA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.80 70.0 7.16e-01 97.5% 94.8%
4aqnA02 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.74 70.0 6.47e-01 100.0% 95.3%
152lA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 64.0 6.37e-01 97.5% 96.3%
1xjuA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.67 60.0 6.08e-01 99.4% 95.5%
2be4A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 25.0 3.24e-01 93.0% 67.0%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.54 32.0 3.55e-01 100.0% 72.2%
2ze7A02 1.10.287.890 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 0.53 34.0 4.10e-01 71.5% 100.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2488339 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.85 74.0 7.68e-01 100.0% 97.3%
136932 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.84 75.0 7.43e-01 99.4% 88.5%
159686 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.83 73.0 7.61e-01 100.0% 98.6%
2771202 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.81 73.0 7.31e-01 100.0% 92.5%
3033455 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.81 70.0 7.02e-01 100.0% 89.4%
4019669 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.81 73.0 7.37e-01 100.0% 96.8%
3974990 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.81 54.0 6.41e-01 77.8% 97.3%
7422 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.67 60.0 6.08e-01 99.4% 95.5%
4955101 5073.1.1.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.51 42.0 3.33e-01 88.0% 88.9%
5062824 5073.1.1.11 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C 0.51 46.0 3.13e-01 100.0% 83.9%
3591047 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.50 33.0 3.78e-01 96.2% 92.7%