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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00198
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00198
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 28-115
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oisB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.85 | 80.0 | 5.48e-01 | 100.0% | 46.1% |
| 1xkgA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.82 | 76.0 | 5.13e-01 | 100.0% | 34.2% |
| 1deuB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.82 | 76.0 | 5.26e-01 | 100.0% | 48.7% |
| 1jqpA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.81 | 75.0 | 5.43e-01 | 100.0% | 48.2% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.81 | 75.0 | 5.34e-01 | 100.0% | 44.2% |
| 5egwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.80 | 74.0 | 4.79e-01 | 100.0% | 28.9% |
| 6zq3A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.79 | 73.0 | 5.44e-01 | 100.0% | 51.4% |
| 5fpwA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.79 | 73.0 | 4.97e-01 | 100.0% | 41.4% |
| 3pw3D00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.76 | 70.0 | 4.57e-01 | 100.0% | 49.6% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.63 | 42.0 | 4.63e-01 | 79.5% | 84.5% |
| 3ikhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.62 | 54.0 | 3.78e-01 | 96.6% | 48.3% |
| 1usgA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 54.0 | 4.15e-01 | 97.7% | 92.0% |
| 4ms4A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 49.0 | 3.80e-01 | 96.6% | 91.2% |
| 3bh1A03 | 3.40.140.40 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain | 0.56 | 48.0 | 4.19e-01 | 100.0% | 74.7% |
| 1dj8A00 | 1.10.890.10 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A | 0.54 | 37.0 | 3.88e-01 | 81.8% | 78.5% |
| 3tw6B03 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 45.0 | 2.84e-01 | 100.0% | 18.0% |
| 4ze8A03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.52 | 39.0 | 3.04e-01 | 81.8% | 56.7% |
| 7degA01 | 1.20.210.10 | Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain | 0.51 | 43.0 | 2.70e-01 | 98.9% | 52.8% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5013895 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.88 | 82.0 | 5.30e-01 | 100.0% | 36.6% |
| 5034502 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.87 | 82.0 | 5.89e-01 | 100.0% | 50.2% |
| 4978305 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.86 | 80.0 | 5.39e-01 | 100.0% | 39.3% |
| 1165617 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.86 | 74.0 | 6.40e-01 | 90.9% | 63.3% |
| 3229331 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.85 | 80.0 | 5.60e-01 | 100.0% | 44.3% |
| 4960361 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.85 | 80.0 | 5.40e-01 | 100.0% | 39.3% |
| 3830240 | 109.4.1.84 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › API5 | 0.85 | 79.0 | 4.69e-01 | 100.0% | 22.3% |
| 3723538 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.84 | 78.0 | 5.18e-01 | 100.0% | 42.5% |
| 4448672 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.83 | 77.0 | 5.15e-01 | 100.0% | 36.0% |
| 4127832 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.82 | 76.0 | 5.15e-01 | 100.0% | 36.0% |
| 4391291 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 76.0 | 5.44e-01 | 100.0% | 45.0% |
| 5005855 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 76.0 | 5.53e-01 | 100.0% | 53.8% |
| 3629255 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.82 | 77.0 | 5.13e-01 | 100.0% | 34.1% |
| 3998812 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 76.0 | 5.00e-01 | 100.0% | 37.9% |
| 3940207 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 76.0 | 5.40e-01 | 100.0% | 42.6% |
| 4024611 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.82 | 76.0 | 4.90e-01 | 100.0% | 29.2% |
| 4505160 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 76.0 | 5.19e-01 | 100.0% | 37.6% |
| 4059449 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.82 | 76.0 | 5.29e-01 | 100.0% | 40.0% |
| 4047160 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 76.0 | 5.40e-01 | 100.0% | 42.5% |
| 3486878 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.82 | 76.0 | 5.05e-01 | 100.0% | 36.0% |
| 3891882 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 76.0 | 5.16e-01 | 100.0% | 44.6% |
| 4663619 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.82 | 75.0 | 4.99e-01 | 100.0% | 36.3% |
| 3497089 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.81 | 76.0 | 5.07e-01 | 100.0% | 37.0% |
| 3906939 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 5.06e-01 | 100.0% | 35.7% |
| 3261680 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 5.12e-01 | 100.0% | 41.2% |
| 3514380 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.81 | 75.0 | 5.05e-01 | 100.0% | 37.0% |
| 4770613 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 6.04e-01 | 100.0% | 68.3% |
| 3564430 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 4.99e-01 | 100.0% | 42.8% |
| 3938586 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 5.24e-01 | 100.0% | 40.4% |
| 3489030 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 5.02e-01 | 100.0% | 45.2% |
| 3426348 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 5.91e-01 | 100.0% | 65.3% |
| None | — | 0.81 | 75.0 | 5.16e-01 | 100.0% | 37.8% | |
| 3795430 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 5.32e-01 | 100.0% | 42.8% |
| 3516722 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 4.42e-01 | 100.0% | 22.5% |
| 3479869 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.81 | 75.0 | 4.95e-01 | 100.0% | 45.1% |
| 4027374 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 74.0 | 5.04e-01 | 100.0% | 47.8% |
| 3234755 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.81 | 75.0 | 5.37e-01 | 100.0% | 45.5% |
| 4268173 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.81 | 74.0 | 4.80e-01 | 100.0% | 28.8% |
| 3242975 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.80 | 74.0 | 4.88e-01 | 100.0% | 40.3% |
| None | — | 0.80 | 74.0 | 4.98e-01 | 100.0% | 34.4% | |
| 3470973 | 219.1.1.110 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 | 0.80 | 74.0 | 5.27e-01 | 100.0% | 43.4% |
| 3617140 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.80 | 74.0 | 4.95e-01 | 100.0% | 34.5% |
| 3514367 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.80 | 74.0 | 5.09e-01 | 100.0% | 41.1% |
| 2793930 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.80 | 74.0 | 4.96e-01 | 100.0% | 44.5% |
| 3395889 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.80 | 74.0 | 4.90e-01 | 100.0% | 45.3% |
| 4627786 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.80 | 74.0 | 5.04e-01 | 100.0% | 34.7% |
| 3996190 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.80 | 73.0 | 6.02e-01 | 100.0% | 68.6% |
| 4377695 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.80 | 74.0 | 4.92e-01 | 100.0% | 46.0% |
| 3519107 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.80 | 73.0 | 4.82e-01 | 100.0% | 47.3% |
| 3392327 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 73.0 | 5.17e-01 | 100.0% | 42.4% |
| 3940173 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 73.0 | 5.25e-01 | 100.0% | 45.7% |
| 3505106 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 71.0 | 5.56e-01 | 97.7% | 75.0% |
| 3244679 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 73.0 | 4.67e-01 | 100.0% | 36.8% |
| 3620332 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 72.0 | 4.72e-01 | 100.0% | 40.0% |
| 4024826 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 73.0 | 4.70e-01 | 100.0% | 34.1% |
| 4783690 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 67.0 | 6.26e-01 | 90.9% | 77.4% |
| None | — | 0.79 | 73.0 | 4.77e-01 | 100.0% | 32.9% | |
| 5064725 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.79 | 74.0 | 4.95e-01 | 100.0% | 37.2% |
| 3248099 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.78 | 71.0 | 4.74e-01 | 100.0% | 31.7% |
| 3803751 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.78 | 72.0 | 5.29e-01 | 100.0% | 52.1% |
| 3656345 | 219.1.1.2 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1,Propeptide_C1 | 0.77 | 70.0 | 4.64e-01 | 100.0% | 44.1% |
| 3433434 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.76 | 69.0 | 5.04e-01 | 96.6% | 44.2% |
| 3813985 | 219.1.1.124 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF29469 | 0.71 | 57.0 | 4.19e-01 | 85.2% | 41.8% |
| 3327405 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.69 | 49.0 | 4.14e-01 | 73.9% | 57.1% |
| 4987569 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.60 | 43.0 | 4.27e-01 | 79.5% | 70.5% |
| 3299336 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 53.0 | 3.61e-01 | 100.0% | 28.7% |
| 3319076 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.57 | 49.0 | 4.92e-01 | 96.6% | 98.9% |
| 5057476 | 2004.1.1.221 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › P-loop_TraG | 0.57 | 43.0 | 2.85e-01 | 83.0% | 24.4% |
| 4178644 | 4953.1.1.4 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 | 0.56 | 39.0 | 3.97e-01 | 86.4% | 72.2% |
| 3981579 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 37.0 | 3.84e-01 | 100.0% | 73.8% |
D2
medium
residues 116-204
Domain cluster:
rep: cathepsin__YP_006607808__Apocheima_cinerarium_nucleopolyhedrovirus__307461__D59-159
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00112.30 best | Peptidase_C1 | 40.1 | 6.20e-10 | 94.4% | 38.2% |