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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00240
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00240
Identity
- Kingdom:
- phage
Quality
56.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-133
D2
high
residues 144-192
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.68 | 52.0 | 4.90e-01 | 83.7% | 77.0% |
| 4gr5C01 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.66 | 54.0 | 4.97e-01 | 91.8% | 81.2% |
| 4uejA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.64 | 49.0 | 3.23e-01 | 83.7% | 94.2% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.62 | 46.0 | 4.26e-01 | 83.7% | 71.2% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 44.0 | 3.40e-01 | 89.8% | 39.7% |
| 2vccA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 38.0 | 2.29e-01 | 71.4% | 51.7% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.54 | 42.0 | 2.75e-01 | 87.8% | 52.1% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.54 | 40.0 | 3.26e-01 | 87.8% | 89.0% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.53 | 41.0 | 3.40e-01 | 98.0% | 70.8% |
| 1o5wA02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.53 | 41.0 | 2.65e-01 | 87.8% | 54.5% |
| 2vugA03 | 3.30.470.30 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme | 0.51 | 38.0 | 3.11e-01 | 83.7% | 54.9% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 34.0 | 3.01e-01 | 81.6% | 43.0% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 38.0 | 3.40e-01 | 91.8% | 91.6% |
| 2vf9A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.50 | 36.0 | 2.72e-01 | 77.6% | 72.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4436983 | 384.1.1.0 ↗ | few secondary structure elements › BPTI-like › BPTI-like › BPTI-like | 0.72 | 52.0 | 5.70e-01 | 81.6% | 97.4% |
| 148141 | 4076.2.1.1 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH | 0.71 | 55.0 | 4.78e-01 | 83.7% | 63.5% |
| 3578128 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 42.0 | 4.06e-01 | 85.7% | 54.5% |
| 4044667 | 4076.2.1.2 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › PF27096 | 0.68 | 59.0 | 5.16e-01 | 100.0% | 93.3% |
| 4512685 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.68 | 59.0 | 4.54e-01 | 100.0% | 60.9% |
| 4266946 | 192.17.1.11 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › UVR | 0.67 | 58.0 | 4.42e-01 | 100.0% | 55.0% |
| 4646206 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.67 | 58.0 | 4.48e-01 | 100.0% | 57.4% |
| 5078006 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.67 | 55.0 | 4.92e-01 | 91.8% | 91.4% |
| 4504951 | 4076.2.1.2 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › PF27096 | 0.67 | 57.0 | 4.62e-01 | 100.0% | 94.0% |
| 1833313 | 4076.2.1.1 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH | 0.65 | 52.0 | 4.84e-01 | 89.8% | 76.6% |
| 5060529 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.64 | 53.0 | 4.74e-01 | 91.8% | 91.4% |
| 3922996 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.58 | 50.0 | 3.77e-01 | 98.0% | 78.4% |
| 4961948 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.55 | 39.0 | 3.05e-01 | 77.6% | 75.0% |
| 5032923 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.52 | 39.0 | 2.45e-01 | 87.8% | 62.1% |
| 3276479 | 621.1.1.3 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB | 0.51 | 38.0 | 2.57e-01 | 83.7% | 24.9% |
| 3237480 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.50 | 36.0 | 2.24e-01 | 81.6% | 13.2% |