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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00258
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00258
Identity
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-75
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1up6E02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.68 | 50.0 | 3.37e-01 | 78.3% | 27.9% |
| 5z5dA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 48.0 | 3.42e-01 | 76.8% | 39.2% |
| 2o3oA02 | 3.30.310.160 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 | 0.63 | 51.0 | 4.38e-01 | 92.8% | 75.8% |
| 3v8uA04 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.63 | 54.0 | 4.40e-01 | 100.0% | 95.0% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.62 | 36.0 | 3.78e-01 | 100.0% | 62.3% |
| 1oeyA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 48.0 | 4.57e-01 | 84.1% | 93.9% |
| 4fd0A01 | 2.60.40.3630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 51.0 | 4.90e-01 | 91.3% | 91.1% |
| 8ew8A01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.61 | 43.0 | 3.05e-01 | 76.8% | 76.7% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.61 | 42.0 | 3.66e-01 | 78.3% | 47.2% |
| 2xzmP00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 47.0 | 3.73e-01 | 85.5% | 54.7% |
| 2v94B00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 46.0 | 4.20e-01 | 82.6% | 82.8% |
| 2v1oB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 45.0 | 3.57e-01 | 100.0% | 39.2% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.58 | 47.0 | 3.55e-01 | 94.2% | 51.9% |
| 3holA01 | 2.40.128.250 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 48.0 | 4.62e-01 | 97.1% | 97.6% |
| 3kh8A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 40.0 | 3.28e-01 | 100.0% | 39.8% |
| 1u7bA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.56 | 45.0 | 3.15e-01 | 92.8% | 92.4% |
| 4oddA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 47.0 | 3.79e-01 | 100.0% | 71.1% |
| 2nwvA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.56 | 43.0 | 3.79e-01 | 100.0% | 54.5% |
| 3itqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.55 | 45.0 | 3.38e-01 | 92.8% | 71.9% |
| 1z2zA02 | 3.30.70.3160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 45.0 | 4.15e-01 | 92.8% | 68.9% |
| 3cxbA01 | 3.30.2440.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein SifA fold › Secreted effector protein SifA | 0.55 | 44.0 | 3.84e-01 | 92.8% | 72.2% |
| 2m38A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.82e-01 | 100.0% | 78.5% |
| 2rovA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 45.0 | 3.97e-01 | 100.0% | 85.5% |
| 1zswA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 42.0 | 3.20e-01 | 92.8% | 33.1% |
| 2qrdE01 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.55 | 40.0 | 2.98e-01 | 78.3% | 81.7% |
| 4hetA01 | 2.60.40.2340 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 46.0 | 4.25e-01 | 100.0% | 87.2% |
| 1e5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 45.0 | 3.69e-01 | 100.0% | 71.1% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 40.0 | 3.89e-01 | 84.1% | 74.7% |
| 1v3eA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.54 | 38.0 | 2.38e-01 | 78.3% | 12.1% |
| 7rd0A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 39.0 | 2.57e-01 | 78.3% | 100.0% |
| 3d8dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 44.0 | 3.70e-01 | 100.0% | 83.5% |
| 4pibA00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.54 | 43.0 | 3.39e-01 | 95.7% | 70.7% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.53 | 41.0 | 3.69e-01 | 100.0% | 58.7% |
| 1plqA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.53 | 44.0 | 3.06e-01 | 97.1% | 81.4% |
| 3nqpA00 | 1.25.40.390 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.52 | 41.0 | 2.54e-01 | 88.4% | 61.1% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 41.0 | 3.15e-01 | 100.0% | 36.5% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.52 | 43.0 | 3.05e-01 | 100.0% | 34.5% |
| 4u3vA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.52 | 44.0 | 3.11e-01 | 98.6% | 88.8% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 44.0 | 3.82e-01 | 95.7% | 89.8% |
| 2uvaG08 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 2.81e-01 | 91.3% | 66.6% |
| 2gvhB02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 39.0 | 3.37e-01 | 100.0% | 50.4% |
| 1qftB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 42.0 | 3.33e-01 | 100.0% | 67.5% |
| 3b7kB01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 40.0 | 3.25e-01 | 100.0% | 43.6% |
| 2iteA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.65e-01 | 100.0% | 90.1% |
| 1uyjA01 | 3.30.360.60 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.50 | 43.0 | 4.13e-01 | 100.0% | 82.9% |
| 3omzA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 3.58e-01 | 100.0% | 62.1% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973606 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.69 | 47.0 | 5.13e-01 | 75.4% | 90.9% |
| 3980136 | 243.3.1.21 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YsaB | 0.68 | 48.0 | 4.74e-01 | 78.3% | 68.0% |
| 3837754 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.63 | 56.0 | 4.31e-01 | 100.0% | 77.4% |
| 3757249 | 11.1.1.1238 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26155 | 0.62 | 51.0 | 4.49e-01 | 89.9% | 89.0% |
| 4031833 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.62 | 45.0 | 4.68e-01 | 100.0% | 90.0% |
| 3899114 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 53.0 | 4.79e-01 | 97.1% | 95.8% |
| 3521147 | 304.166.1.7 ↗ | a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PTPRR_N | 0.61 | 50.0 | 4.44e-01 | 89.9% | 89.0% |
| 3632377 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 50.0 | 4.46e-01 | 88.4% | 83.2% |
| 3796586 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.60 | 47.0 | 3.43e-01 | 100.0% | 31.4% |
| 3744021 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.60 | 48.0 | 4.22e-01 | 91.3% | 60.9% |
| 3239978 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.58 | 45.0 | 3.56e-01 | 100.0% | 40.0% |
| 3911194 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.58 | 50.0 | 4.76e-01 | 100.0% | 82.5% |
| 3481724 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 50.0 | 4.36e-01 | 100.0% | 72.7% |
| 3939096 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.57 | 44.0 | 4.36e-01 | 92.8% | 78.7% |
| 3338395 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.57 | 40.0 | 3.23e-01 | 100.0% | 36.4% |
| None | — | 0.57 | 48.0 | 4.30e-01 | 100.0% | 68.6% | |
| 3955935 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.57 | 46.0 | 3.38e-01 | 95.7% | 68.6% |
| 3389668 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.57 | 48.0 | 4.35e-01 | 100.0% | 71.0% |
| 3437088 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.57 | 48.0 | 3.58e-01 | 100.0% | 80.5% |
| 3895141 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.56 | 48.0 | 4.07e-01 | 100.0% | 82.4% |
| 2875609 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.56 | 46.0 | 3.76e-01 | 97.1% | 74.1% |
| 4373903 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.56 | 48.0 | 3.15e-01 | 97.1% | 72.7% |
| 312351 | 223.1.1.4 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › IclR | 0.55 | 40.0 | 3.09e-01 | 78.3% | 93.5% |
| 3476015 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.55 | 46.0 | 4.26e-01 | 100.0% | 71.6% |
| 3269121 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.55 | 46.0 | 4.11e-01 | 100.0% | 71.8% |
| 3209497 | 206.1.3.18 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › D123 | 0.55 | 48.0 | 3.08e-01 | 97.1% | 71.3% |
| 3615703 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.55 | 45.0 | 3.55e-01 | 97.1% | 84.7% |
| 4025881 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.55 | 47.0 | 3.67e-01 | 100.0% | 53.9% |
| 3741318 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 40.0 | 2.42e-01 | 78.3% | 68.2% |
| 3522591 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.54 | 47.0 | 3.14e-01 | 100.0% | 29.7% |
| 3882333 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.54 | 47.0 | 3.88e-01 | 100.0% | 66.2% |
| 3177460 | 3270.1.1.0 ↗ | a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase | 0.54 | 38.0 | 3.47e-01 | 76.8% | 61.0% |
| 3962202 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.54 | 42.0 | 3.73e-01 | 100.0% | 55.7% |
| 3784673 | 220.1.1.190 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26660 | 0.54 | 46.0 | 3.59e-01 | 100.0% | 63.6% |
| 1299904 | 3156.1.1.12 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › PixA | 0.53 | 43.0 | 3.39e-01 | 95.7% | 70.7% |
| 4562002 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.53 | 41.0 | 3.30e-01 | 88.4% | 91.6% |
| 3407350 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 42.0 | 3.14e-01 | 100.0% | 33.0% |
| 3455474 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.53 | 44.0 | 3.19e-01 | 100.0% | 39.2% |
| None | — | 0.53 | 38.0 | 2.55e-01 | 79.7% | 89.3% | |
| 3896677 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.52 | 39.0 | 2.57e-01 | 81.2% | 90.7% |
| 4952416 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.52 | 41.0 | 3.50e-01 | 89.9% | 87.2% |
| 4026643 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 39.0 | 3.67e-01 | 84.1% | 65.9% |
| 5082048 | 4200.1.1.0 ↗ | beta barrels › YmcC-like › YmcC-like › YmcC-like | 0.52 | 45.0 | 3.34e-01 | 100.0% | 91.6% |
| 5005811 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.52 | 43.0 | 4.15e-01 | 94.2% | 97.5% |
| 3743292 | 222.1.1.27 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 | 0.52 | 39.0 | 3.33e-01 | 84.1% | 59.2% |
| 5025086 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.51 | 36.0 | 3.99e-01 | 100.0% | 94.5% |
| 3199763 | 220.1.1.202 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N | 0.51 | 43.0 | 3.67e-01 | 100.0% | 58.4% |
| 3785102 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 42.0 | 2.84e-01 | 94.2% | 34.1% |
| 4340107 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 35.0 | 3.41e-01 | 72.5% | 84.0% |
| 3500755 | 304.55.1.14 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp | 0.50 | 35.0 | 2.61e-01 | 76.8% | 62.9% |