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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00264
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00264
Identity
- Kingdom:
- phage
Quality
93.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 21-93
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vw3B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 54.0 | 5.00e-01 | 100.0% | 98.9% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 38.0 | 4.16e-01 | 89.0% | 84.7% |
| 1a15A00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 42.0 | 4.33e-01 | 97.3% | 85.1% |
| 2vd5B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 38.0 | 2.85e-01 | 71.2% | 55.1% |
| 1yzyA02 | 3.40.980.20 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › Four-carbon acid sugar kinase, nucleotide binding domain | 0.56 | 42.0 | 3.20e-01 | 80.8% | 90.4% |
| 4pfyA02 | 3.90.76.10 | Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 | 0.56 | 39.0 | 3.15e-01 | 72.6% | 70.1% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.56 | 39.0 | 3.40e-01 | 74.0% | 57.3% |
| 4huzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 38.0 | 2.97e-01 | 71.2% | 36.4% |
| 3a32A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.54 | 48.0 | 3.89e-01 | 100.0% | 75.2% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.53 | 44.0 | 3.72e-01 | 95.9% | 65.2% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 38.0 | 4.27e-01 | 91.8% | 98.2% |
| 3doaA01 | 2.30.310.10 | Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain | 0.53 | 42.0 | 3.40e-01 | 89.0% | 57.5% |
| 3d8dA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 3.75e-01 | 100.0% | 79.9% |
| 2eifA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 40.0 | 4.42e-01 | 87.7% | 100.0% |
| 5d9hA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 37.0 | 3.49e-01 | 72.6% | 92.0% |
| 1eovA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 41.0 | 3.42e-01 | 86.3% | 77.6% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 3.80e-01 | 87.7% | 83.9% |
| 2bs2A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 44.0 | 2.84e-01 | 93.2% | 87.2% |
| 4c3xA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 41.0 | 2.70e-01 | 90.4% | 91.4% |
| 6bu2A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 38.0 | 3.08e-01 | 80.8% | 68.0% |
| 3oa4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 38.0 | 3.14e-01 | 79.5% | 72.2% |
| 1n7vA01 | 2.105.10.10 | Mainly Beta › 3 Propeller › Pseudo beta propeller › Pseudo beta propeller | 0.51 | 42.0 | 3.28e-01 | 94.5% | 80.8% |
| 5jpmH01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 42.0 | 3.48e-01 | 91.8% | 91.9% |
| 8bveB01 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.51 | 37.0 | 2.98e-01 | 79.5% | 89.4% |
| 2r5vA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 35.0 | 2.80e-01 | 76.7% | 35.3% |
| 3ghjA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 35.0 | 3.04e-01 | 74.0% | 46.6% |
| 2ls0101 | 2.40.50.670 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme | 0.50 | 43.0 | 3.74e-01 | 95.9% | 68.4% |
| 4c26A00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.50 | 31.0 | 3.28e-01 | 76.7% | 68.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3626927 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.64 | 39.0 | 4.48e-01 | 72.6% | 83.6% |
| 3285829 | 4.1.1.425 ↗ | beta barrels › SH3 › SH3 › SH3 › RNHCP | 0.62 | 49.0 | 4.32e-01 | 84.9% | 67.6% |
| 3740379 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.60 | 44.0 | 4.76e-01 | 90.4% | 96.7% |
| 3190369 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.60 | 54.0 | 4.77e-01 | 100.0% | 70.5% |
| 3410524 | 2.6.1.0 ↗ | beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease | 0.60 | 43.0 | 4.09e-01 | 93.2% | 64.7% |
| 3388887 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.59 | 43.0 | 4.53e-01 | 89.0% | 87.7% |
| 3845291 | 220.1.1.119 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th | 0.59 | 49.0 | 3.45e-01 | 93.2% | 41.3% |
| 3400005 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.59 | 42.0 | 4.51e-01 | 84.9% | 91.7% |
| 3238244 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 41.0 | 3.94e-01 | 76.7% | 63.5% |
| 3597004 | 220.1.1.26 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II | 0.58 | 49.0 | 4.05e-01 | 94.5% | 65.2% |
| 4440689 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.58 | 38.0 | 4.03e-01 | 89.0% | 76.9% |
| 4144799 | 2.1.1.14 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N | 0.57 | 37.0 | 3.81e-01 | 87.7% | 70.0% |
| 3238934 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 41.0 | 3.50e-01 | 80.8% | 46.7% |
| 5022812 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.56 | 39.0 | 2.88e-01 | 72.6% | 26.5% |
| 3488114 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 37.0 | 3.20e-01 | 87.7% | 40.8% |
| 4024366 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.56 | 46.0 | 3.17e-01 | 95.9% | 45.0% |
| 3659037 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.56 | 47.0 | 3.05e-01 | 97.3% | 43.4% |
| 3516152 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.55 | 39.0 | 3.76e-01 | 93.2% | 63.5% |
| 2984229 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.55 | 37.0 | 3.63e-01 | 93.2% | 64.1% |
| 3770806 | 220.1.1.119 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Syntrophin_4th | 0.55 | 45.0 | 3.90e-01 | 91.8% | 70.3% |
| 3602840 | 2004.1.1.67 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA | 0.54 | 38.0 | 2.77e-01 | 74.0% | 25.1% |
| 3389668 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.54 | 44.0 | 4.01e-01 | 90.4% | 79.0% |
| 5017962 | 220.1.1.322 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6141 | 0.54 | 42.0 | 3.62e-01 | 89.0% | 70.4% |
| 4587559 | 4263.2.1.0 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain | 0.54 | 42.0 | 4.19e-01 | 95.9% | 86.7% |
| 4975146 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.54 | 42.0 | 3.52e-01 | 87.7% | 81.5% |
| 4225322 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.53 | 41.0 | 4.32e-01 | 93.2% | 96.9% |
| 4269473 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.53 | 40.0 | 4.03e-01 | 93.2% | 82.7% |
| 3163776 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 42.0 | 3.59e-01 | 93.2% | 86.2% |
| 3347257 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 41.0 | 3.60e-01 | 89.0% | 77.4% |
| 3782529 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 39.0 | 3.09e-01 | 86.3% | 62.3% |
| 3426675 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.51 | 34.0 | 3.77e-01 | 98.6% | 86.4% |
| 3556811 | 391.1.1.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 | 0.51 | 30.0 | 3.39e-01 | 80.8% | 82.0% |
| 4991059 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 32.0 | 3.65e-01 | 72.6% | 94.0% |
| 3210256 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 35.0 | 2.31e-01 | 72.6% | 23.6% |
| 3281426 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 35.0 | 3.79e-01 | 75.3% | 88.3% |
| 3922554 | 827.1.1.1 ↗ | a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain › Integrin_B_tail | 0.50 | 38.0 | 3.68e-01 | 84.9% | 97.6% |
| 3892575 | 827.1.1.1 ↗ | a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain › Integrin_B_tail | 0.50 | 37.0 | 3.69e-01 | 80.8% | 95.0% |
| 3960958 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.50 | 37.0 | 3.26e-01 | 78.1% | 62.7% |