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LD_Run2_13_scaffold_0_prodigal-single.1__X__X__00278
Bact-VirLD_Run2_13_scaffold_0_prodigal-single.1__X__X__00278
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 23-96
Domain cluster:
representative
CATH (58)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lteD00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.75 | 37.0 | 3.06e-01 | 71.6% | 28.5% |
| 3hriA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.74 | 39.0 | 3.67e-01 | 78.4% | 43.7% |
| 3netB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.73 | 39.0 | 3.51e-01 | 77.0% | 39.8% |
| 1nj1A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.70 | 43.0 | 3.85e-01 | 73.0% | 44.2% |
| 8dkrB01 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.69 | 50.0 | 3.55e-01 | 77.0% | 34.1% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.69 | 43.0 | 3.89e-01 | 77.0% | 46.5% |
| 2a1fC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.65 | 53.0 | 3.63e-01 | 86.5% | 38.8% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.64 | 47.0 | 3.03e-01 | 77.0% | 21.7% |
| 6omzA00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.64 | 55.0 | 3.83e-01 | 100.0% | 93.1% |
| 4q1tB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.64 | 57.0 | 3.95e-01 | 100.0% | 94.0% |
| 4w8bA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 55.0 | 3.56e-01 | 100.0% | 92.2% |
| 3fynA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 48.0 | 3.76e-01 | 79.7% | 38.8% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.63 | 38.0 | 3.67e-01 | 73.0% | 51.2% |
| 1vkpB00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.61 | 49.0 | 3.10e-01 | 85.1% | 17.4% |
| 3g3sA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 49.0 | 4.08e-01 | 90.5% | 66.9% |
| 5cg0F00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.60 | 52.0 | 3.22e-01 | 100.0% | 95.8% |
| 2bh1X00 | 3.30.300.160 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Type II secretion system, protein E, N-terminal domain | 0.60 | 30.0 | 3.12e-01 | 73.0% | 51.5% |
| 7b3aA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 48.0 | 3.83e-01 | 90.5% | 61.7% |
| 1ps9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 41.0 | 3.25e-01 | 73.0% | 42.8% |
| 4joqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 46.0 | 3.83e-01 | 100.0% | 47.5% |
| 7mi4A01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.58 | 47.0 | 3.47e-01 | 89.2% | 49.2% |
| 1cmwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.57 | 50.0 | 3.97e-01 | 97.3% | 66.9% |
| 1lbqA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 50.0 | 4.11e-01 | 100.0% | 86.3% |
| 3i8oA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.57 | 49.0 | 4.19e-01 | 100.0% | 85.2% |
| 2r2dA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 45.0 | 3.04e-01 | 86.5% | 79.3% |
| 1vc1A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.57 | 45.0 | 3.99e-01 | 86.5% | 84.5% |
| 6gnaA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 40.0 | 3.10e-01 | 77.0% | 54.8% |
| 7ch9L01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.56 | 42.0 | 4.04e-01 | 81.1% | 94.3% |
| 6diiL01 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.56 | 45.0 | 2.83e-01 | 91.9% | 46.5% |
| 3cnlA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 41.0 | 3.29e-01 | 77.0% | 44.9% |
| 1mb3A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 40.0 | 3.45e-01 | 75.7% | 92.3% |
| 2h9aA02 | 3.40.50.11600 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 44.0 | 3.72e-01 | 86.5% | 77.0% |
| 3lloA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.55 | 47.0 | 3.94e-01 | 95.9% | 72.7% |
| 4dgfA00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.55 | 45.0 | 3.86e-01 | 90.5% | 77.9% |
| 2pt7G01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.55 | 36.0 | 3.57e-01 | 73.0% | 62.8% |
| 1r0sA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 40.0 | 3.33e-01 | 77.0% | 81.1% |
| 4u5pA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.55 | 37.0 | 3.11e-01 | 71.6% | 70.7% |
| 2i6gB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 45.0 | 3.42e-01 | 100.0% | 72.4% |
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 44.0 | 3.63e-01 | 90.5% | 63.0% |
| 2xryA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 44.0 | 3.67e-01 | 98.6% | 85.8% |
| 2dfwA02 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.53 | 39.0 | 3.81e-01 | 78.4% | 85.7% |
| 3ktbA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 34.0 | 3.05e-01 | 75.7% | 46.2% |
| 4ir8B02 | 3.40.190.80 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.53 | 39.0 | 3.32e-01 | 100.0% | 45.8% |
| 4qbnA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 42.0 | 3.90e-01 | 86.5% | 83.9% |
| 3dnfA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.53 | 43.0 | 3.94e-01 | 89.2% | 93.9% |
| 3guvA00 | 3.40.50.1390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain | 0.53 | 44.0 | 3.58e-01 | 100.0% | 47.7% |
| 3wxmB03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.53 | 42.0 | 3.68e-01 | 85.1% | 73.8% |
| 2p2sA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 47.0 | 3.84e-01 | 100.0% | 67.9% |
| 2m9mA00 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 3.45e-01 | 90.5% | 67.6% |
| 4g26A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 40.0 | 2.69e-01 | 85.1% | 23.0% |
| 2heuB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 40.0 | 3.17e-01 | 95.9% | 37.8% |
| 3brsA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 42.0 | 3.57e-01 | 100.0% | 53.3% |
| 4wxmB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 40.0 | 3.44e-01 | 100.0% | 51.2% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.51 | 39.0 | 3.15e-01 | 81.1% | 67.4% |
| 1zbsA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 39.0 | 3.55e-01 | 81.1% | 78.1% |
| 1wy5A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 42.0 | 3.12e-01 | 97.3% | 59.9% |
| 2qxyA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 44.0 | 3.79e-01 | 98.6% | 68.1% |
| 1pyoC00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 42.0 | 3.41e-01 | 100.0% | 50.3% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4626362 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.76 | 39.0 | 4.33e-01 | 70.3% | 61.7% |
| 4443698 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.74 | 40.0 | 3.31e-01 | 71.6% | 31.7% |
| 4125023 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.73 | 50.0 | 3.77e-01 | 70.3% | 83.5% |
| 3261281 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.73 | 50.0 | 3.77e-01 | 70.3% | 83.9% |
| 4091319 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.73 | 42.0 | 3.78e-01 | 70.3% | 42.9% |
| 5036669 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.72 | 40.0 | 3.61e-01 | 71.6% | 40.0% |
| 4376572 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.72 | 36.0 | 3.89e-01 | 71.6% | 55.4% |
| 4317320 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.71 | 40.0 | 3.64e-01 | 70.3% | 41.8% |
| 5000451 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.71 | 49.0 | 3.42e-01 | 73.0% | 37.5% |
| 5073376 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.70 | 40.0 | 3.20e-01 | 82.4% | 30.4% |
| 4031881 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.69 | 49.0 | 3.69e-01 | 74.3% | 100.0% |
| 4193221 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.69 | 39.0 | 3.42e-01 | 70.3% | 38.0% |
| 3180756 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 48.0 | 4.94e-01 | 74.3% | 80.0% |
| None | — | 0.68 | 58.0 | 4.40e-01 | 98.6% | 52.1% | |
| 4505221 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.67 | 45.0 | 3.72e-01 | 81.1% | 40.0% |
| 4335045 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.67 | 44.0 | 3.89e-01 | 79.7% | 46.7% |
| 5038182 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.67 | 42.0 | 4.13e-01 | 82.4% | 58.7% |
| 4015700 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 58.0 | 4.38e-01 | 100.0% | 51.6% |
| 4932715 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.66 | 44.0 | 3.62e-01 | 79.7% | 37.8% |
| 3719951 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.66 | 54.0 | 4.52e-01 | 89.2% | 88.8% |
| 4990351 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.65 | 42.0 | 3.50e-01 | 85.1% | 37.7% |
| 4399694 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.63 | 57.0 | 3.87e-01 | 100.0% | 81.1% |
| 4884566 | 213.1.1.29 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 | 0.63 | 46.0 | 4.25e-01 | 77.0% | 66.3% |
| 4604011 | 232.1.1.4 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph | 0.63 | 47.0 | 3.06e-01 | 82.4% | 41.5% |
| 4863006 | 2.1.1.21 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 | 0.63 | 45.0 | 4.25e-01 | 75.7% | 96.6% |
| None | — | 0.63 | 39.0 | 2.51e-01 | 73.0% | 12.8% | |
| 3974335 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 52.0 | 3.94e-01 | 98.6% | 38.4% |
| 134965 | 232.1.1.4 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph | 0.62 | 49.0 | 3.11e-01 | 85.1% | 17.1% |
| 3337539 | 224.1.1.2 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin | 0.61 | 46.0 | 3.81e-01 | 81.1% | 67.4% |
| 3672767 | 109.4.1.1277 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, TPR_24 | 0.61 | 42.0 | 3.00e-01 | 71.6% | 28.8% |
| 3408059 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.60 | 47.0 | 3.98e-01 | 89.2% | 72.4% |
| 4308313 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.59 | 48.0 | 3.02e-01 | 87.8% | 95.6% |
| 4235019 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.59 | 41.0 | 3.66e-01 | 77.0% | 51.4% |
| 4944131 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 38.0 | 3.16e-01 | 78.4% | 37.7% |
| 4324598 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.58 | 42.0 | 3.21e-01 | 77.0% | 53.5% |
| 3486319 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 48.0 | 3.44e-01 | 100.0% | 54.3% |
| 4937161 | 2005.1.1.24 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DPRP | 0.57 | 40.0 | 3.17e-01 | 74.3% | 38.1% |
| 5068460 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.56 | 34.0 | 2.79e-01 | 71.6% | 31.0% |
| 3924013 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.56 | 47.0 | 3.23e-01 | 94.6% | 44.5% |
| 4989954 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.56 | 50.0 | 4.01e-01 | 98.6% | 74.3% |
| 3410655 | 2004.1.1.222 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RhoGAP_pG1_pG2 | 0.56 | 46.0 | 3.70e-01 | 100.0% | 44.4% |
| 4957187 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.55 | 48.0 | 4.00e-01 | 100.0% | 84.4% |
| 4183675 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.55 | 43.0 | 3.71e-01 | 100.0% | 52.8% |
| 3969358 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.54 | 48.0 | 3.72e-01 | 97.3% | 80.6% |
| 3593208 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.54 | 40.0 | 2.88e-01 | 78.4% | 60.0% |
| 3248872 | 2496.1.1.2 ↗ | a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › STAS | 0.54 | 45.0 | 3.60e-01 | 95.9% | 78.2% |
| 5051455 | 2007.1.5.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG | 0.54 | 44.0 | 3.72e-01 | 94.6% | 68.9% |
| 4031817 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.53 | 47.0 | 3.63e-01 | 100.0% | 75.9% |
| 4308712 | 2005.1.1.9 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DNA_photolyase | 0.53 | 45.0 | 3.40e-01 | 100.0% | 52.0% |
| 4238071 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.53 | 45.0 | 3.46e-01 | 97.3% | 77.1% |
| 1495352 | 2007.2.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_2 | 0.52 | 42.0 | 3.24e-01 | 100.0% | 35.9% |
| 4944137 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.52 | 43.0 | 3.35e-01 | 94.6% | 66.1% |
| 4932381 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.51 | 43.0 | 3.76e-01 | 100.0% | 84.0% |
| 4322588 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.51 | 44.0 | 3.40e-01 | 100.0% | 90.6% |
| 3831336 | 2007.13.1.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › DUF3479 | 0.51 | 42.0 | 3.44e-01 | 100.0% | 49.1% |
| 1681145 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 44.0 | 3.35e-01 | 95.9% | 47.7% |
D2
medium
residues 97-180
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gtvA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.71 | 60.0 | 4.45e-01 | 94.0% | 37.0% |
| 3cm0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 52.0 | 4.13e-01 | 96.4% | 98.4% |
| 4n13A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.58 | 40.0 | 3.64e-01 | 72.6% | 95.7% |
| 2lseA00 | 1.20.120.1360 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.57 | 41.0 | 3.84e-01 | 73.8% | 88.1% |
| 3no4A00 | 3.40.50.10310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Creatininase | 0.51 | 43.0 | 3.12e-01 | 97.6% | 92.8% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945369 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.73 | 62.0 | 4.62e-01 | 94.0% | 40.5% |
| 3950209 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.70 | 60.0 | 4.49e-01 | 96.4% | 37.6% |
| 4418044 | 2004.1.1.70 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK | 0.67 | 56.0 | 4.16e-01 | 94.0% | 40.2% |
| 4573455 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.65 | 54.0 | 4.11e-01 | 95.2% | 39.5% |
| 4029897 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.64 | 54.0 | 4.23e-01 | 94.0% | 44.9% |
| 5043508 | 2004.1.1.192 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 | 0.62 | 52.0 | 4.22e-01 | 100.0% | 46.3% |
| 4982187 | 2004.1.1.51 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 | 0.59 | 50.0 | 3.90e-01 | 95.2% | 44.4% |
| 3242356 | 605.4.1.19 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › PF30187 | 0.56 | 38.0 | 3.75e-01 | 70.2% | 86.7% |
| 3622987 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.53 | 41.0 | 2.99e-01 | 81.0% | 50.7% |
| 3344575 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.52 | 44.0 | 3.49e-01 | 100.0% | 87.7% |
| 3511477 | 566.1.1.0 ↗ | alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related | 0.50 | 43.0 | 2.95e-01 | 100.0% | 60.3% |