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LEF-1
Euk-VirUrbanus_proteus_nucleopolyhedrovirus
LEF-1__YP_009250103__Urbanus_proteus_nucleopolyhedrovirus__1675866
Identity
- Accession:
- YP_009250103 ↗
- Protein ID:
- LEF-1
- Kingdom:
- euk
Quality
88.5
mean pLDDT
Taxonomy
TaxID: 1675866
Cluster
View cluster (46 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68_104-142_222-242
Domain cluster:
rep: IMGVR_UViG_3300025073_001004-3300025073-Ga0208245_100042257__D1-82_170-181
D2
medium
residues 69-103_143-221
Domain cluster:
rep: LEF-1__YP_009552675__Operophtera_brumata_nucleopolyhedrovirus__1046267__D79-105_127-201
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zy2A02 | 1.10.20.110 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.57 | 42.0 | 3.92e-01 | 86.8% | 61.2% |
| 8b70A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.55 | 45.0 | 3.08e-01 | 88.6% | 59.1% |
| 3tu3B03 | 1.20.1050.100 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 32.0 | 2.83e-01 | 89.5% | 38.8% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.54 | 37.0 | 3.51e-01 | 96.5% | 58.7% |
| 1bucA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 35.0 | 3.41e-01 | 86.0% | 64.2% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.50 | 36.0 | 3.38e-01 | 81.6% | 59.6% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3389029 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 36.0 | 3.68e-01 | 80.7% | 66.1% |
| 3710148 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.55 | 44.0 | 3.51e-01 | 86.0% | 93.8% |
| 3424864 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.55 | 39.0 | 3.46e-01 | 73.7% | 85.3% |
| 3718324 | 5059.1.1.4 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Nuc_sug_transp | 0.53 | 42.0 | 3.03e-01 | 86.0% | 76.9% |
| 3581267 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 35.0 | 3.92e-01 | 81.6% | 85.6% |
| 5044572 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.52 | 39.0 | 4.13e-01 | 83.3% | 86.7% |
| 5030388 | 129.1.1.5 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Ferric_reduct | 0.52 | 40.0 | 3.38e-01 | 82.5% | 96.0% |
| 4363614 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.52 | 41.0 | 3.64e-01 | 85.1% | 91.5% |
| 3739207 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.51 | 40.0 | 4.27e-01 | 89.5% | 100.0% |
| 3704019 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.50 | 36.0 | 3.74e-01 | 74.6% | 86.7% |