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LEF-2

Euk-Vir

Mythimna_unipuncta_granulovirus_B

LEF-2__YP_009345754__Mythimna_unipuncta_granulovirus_B__2169746

Identity

Accession:
YP_009345754 ↗
Protein ID:
LEF-2
Kingdom:
euk

Quality

80.7 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Betabaculovirus_altermyunipunctae

TaxID: 2169746

Cluster

View cluster (14 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-72
PDB
Domain cluster: rep: lef2__YP_009666652__Oxyplax_ochracea_nucleopolyhedrovirus__2083176__D13-67
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03041.21 best Baculo_LEF-2 47.0 3.60e-12 68.7% 27.0%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 45.0 3.08e-01 74.6% 31.4%
6wqbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 49.0 3.89e-01 88.1% 56.8%
2fwrA01 3.40.1170.30 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › 0.60 37.0 3.93e-01 79.1% 71.9%
2vraA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.66e-01 77.6% 69.3%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.57 42.0 3.53e-01 77.6% 51.8%
3dgpB00 3.30.70.1220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TFB5-like 0.57 41.0 4.27e-01 97.0% 82.5%
1l8rA00 3.10.260.20 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski 0.56 47.0 4.18e-01 97.0% 93.1%
4u7mA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.62e-01 77.6% 66.0%
2e5jA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 37.0 3.46e-01 71.6% 75.0%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 38.0 3.38e-01 76.1% 74.5%
5bjuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 42.0 2.79e-01 88.1% 87.2%
1ve4A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 41.0 3.56e-01 89.6% 69.5%
2vd3A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 41.0 3.49e-01 89.6% 69.4%
1qgnA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 39.0 3.16e-01 80.6% 84.1%
6ui4A03 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 40.0 3.69e-01 83.6% 84.9%
3orjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.57e-01 79.1% 75.3%
1nv8A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 2.99e-01 88.1% 89.3%
4la9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 3.38e-01 89.6% 62.3%
6b5kB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 44.0 3.01e-01 100.0% 50.0%
3fveA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 38.0 2.99e-01 80.6% 51.3%
2pyyB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 40.0 3.35e-01 89.6% 62.4%
7nl1H02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 41.0 3.30e-01 92.5% 94.3%
2pvuA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 39.0 3.34e-01 89.6% 65.0%
2zzzA02 3.30.63.10 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain 0.50 35.0 3.62e-01 89.6% 83.3%
2cb1A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.50 42.0 3.45e-01 97.0% 96.3%
3varA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 43.0 2.85e-01 100.0% 49.3%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.68 48.0 3.16e-01 74.6% 28.4%
3200763 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.66 47.0 3.07e-01 74.6% 27.2%
3823396 2003.1.5.185 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF28720 0.63 53.0 3.96e-01 100.0% 88.9%
3359183 2007.1.16.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 › PF28720 0.61 51.0 3.88e-01 98.5% 91.1%
3953655 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.61 44.0 4.54e-01 77.6% 86.2%
3313495 2003.1.5.185 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF28720 0.61 50.0 4.01e-01 100.0% 98.1%
1759955 3110.1.1.1 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › Arnt_C 0.60 46.0 3.94e-01 85.1% 92.0%
3837802 2003.1.5.185 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF28720 0.59 49.0 3.92e-01 100.0% 95.0%
3823304 101.1.2.667 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28720 0.59 49.0 3.86e-01 100.0% 87.3%
2320836 4340.1.1.1 ↗ a+b complex topology › TFB5-related › TFB5-related › TFB5-related › Tfb5 0.58 41.0 4.16e-01 91.0% 75.8%
3998582 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.58 42.0 4.18e-01 77.6% 77.1%
3381691 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.57 41.0 2.69e-01 77.6% 63.7%
3831906 2003.1.5.185 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF28720 0.57 47.0 3.83e-01 100.0% 96.0%
3305375 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.57 40.0 4.01e-01 82.1% 71.4%
3465161 2003.1.5.185 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF28720 0.57 47.0 3.68e-01 100.0% 100.0%
3818254 101.1.2.667 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28720 0.57 47.0 3.63e-01 100.0% 97.7%
4098727 7523.1.1.10 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › HisG 0.55 44.0 3.71e-01 89.6% 75.0%
3229861 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.55 40.0 3.95e-01 77.6% 77.1%
3971354 2003.1.5.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CheR 0.55 42.0 3.11e-01 86.6% 95.5%
4978991 213.1.1.29 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 0.55 39.0 3.17e-01 77.6% 58.6%
3974442 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 47.0 3.53e-01 100.0% 73.2%
3620795 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.54 42.0 3.35e-01 88.1% 74.7%
4955746 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.53 37.0 3.56e-01 76.1% 80.0%
5076791 3110.1.1.0 ↗ a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.53 42.0 3.54e-01 92.5% 96.2%
5000722 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.76e-01 98.5% 79.2%
3978632 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 38.0 3.15e-01 79.1% 73.1%
4009403 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.52 39.0 3.29e-01 83.6% 77.6%
3428260 3016.1.1.7 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Cys_Met_Meta_PP 0.52 41.0 3.16e-01 86.6% 39.3%
3980814 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 39.0 3.22e-01 85.1% 72.6%
2388769 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 41.0 3.75e-01 92.5% 91.5%
3601042 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 37.0 3.01e-01 80.6% 85.6%
3551485 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.50 35.0 2.37e-01 76.1% 78.2%
D2 high residues 91-188
PDB
Domain cluster: rep: LEF-2__YP_009552671__Operophtera_brumata_nucleopolyhedrovirus__1046267__D88-194
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03041.21 best Baculo_LEF-2 108.8 3.50e-31 95.9% 56.6%