←Back to structures
LEF-3
Euk-VirAdoxophyes_orana_nucleopolyhedrovirus
LEF-3__YP_002300571__Adoxophyes_orana_nucleopolyhedrovirus__542343
Identity
- Accession:
- YP_002300571 ↗
- Protein ID:
- LEF-3
- Kingdom:
- euk
Quality
70.2
mean pLDDT
Taxonomy
TaxID: 542343
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 442-541
Domain cluster:
rep: lef-3__YP_009186752__Sucra_jujuba_nucleopolyhedrovirus__1563660__D307-415
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05847.19 best | Baculo_LEF-3 | 86.8 | 2.40e-24 | 99.0% | 32.8% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.77 | 31.0 | 4.57e-01 | 93.0% | 86.4% |
| 3k59A01 | 2.40.50.590 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel | 0.73 | 56.0 | 6.01e-01 | 93.0% | 94.1% |
| 4egvA02 | 2.40.50.840 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.73 | 50.0 | 5.63e-01 | 87.0% | 93.3% |
| 6ro0F00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.71 | 60.0 | 6.14e-01 | 94.0% | 94.9% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.70 | 34.0 | 3.07e-01 | 100.0% | 34.5% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 60.0 | 6.07e-01 | 94.0% | 96.9% |
| 3u4vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 57.0 | 5.43e-01 | 98.0% | 79.3% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 57.0 | 5.68e-01 | 91.0% | 93.1% |
| 4fnfA00 | 2.40.50.50 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.67 | 53.0 | 5.42e-01 | 92.0% | 86.7% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 60.0 | 6.01e-01 | 99.0% | 96.2% |
| 4kt3B00 | 3.10.450.170 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens | 0.67 | 36.0 | 3.37e-01 | 100.0% | 41.4% |
| 4dkaC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 53.0 | 5.68e-01 | 91.0% | 100.0% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 58.0 | 5.56e-01 | 99.0% | 97.4% |
| 4gs3A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 53.0 | 5.51e-01 | 93.0% | 97.8% |
| 2k75A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 50.0 | 4.95e-01 | 94.0% | 80.6% |
| 1xjvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 55.0 | 4.93e-01 | 100.0% | 67.6% |
| 3kf8A00 | 2.40.50.1040 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 54.0 | 4.29e-01 | 96.0% | 51.2% |
| 6ro0B02 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 53.0 | 5.17e-01 | 99.0% | 93.6% |
| 3hpcX00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.59 | 44.0 | 3.87e-01 | 80.0% | 92.9% |
| 3go2A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.59 | 43.0 | 4.20e-01 | 78.0% | 92.1% |
| 3toyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 50.0 | 4.59e-01 | 95.0% | 73.2% |
| 4ikbA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 43.0 | 4.01e-01 | 81.0% | 91.5% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 32.0 | 3.93e-01 | 73.0% | 87.5% |
| 2oqhA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 41.0 | 4.01e-01 | 77.0% | 89.5% |
| 3i6eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 45.0 | 4.50e-01 | 96.0% | 83.5% |
| 3mkcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 42.0 | 3.72e-01 | 79.0% | 88.2% |
| 3iq2A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 41.0 | 3.83e-01 | 78.0% | 95.9% |
| 3thxA02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.55 | 42.0 | 3.55e-01 | 81.0% | 92.7% |
| 3ddmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 47.0 | 4.42e-01 | 96.0% | 76.0% |
| 7k98B01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 47.0 | 4.56e-01 | 96.0% | 95.6% |
| 5uj1A03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.54 | 42.0 | 3.52e-01 | 83.0% | 62.0% |
| 2og9A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 45.0 | 4.19e-01 | 95.0% | 70.8% |
| 4jn7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 42.0 | 4.01e-01 | 96.0% | 72.3% |
| 4pmwA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 41.0 | 4.29e-01 | 84.0% | 100.0% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 32.0 | 3.71e-01 | 75.0% | 85.9% |
| 4g79A00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.52 | 43.0 | 3.99e-01 | 96.0% | 86.6% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 45.0 | 3.39e-01 | 100.0% | 47.9% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 35.0 | 3.87e-01 | 87.0% | 92.1% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287532 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 59.0 | 5.96e-01 | 93.0% | 85.0% |
| 3386801 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 52.0 | 5.23e-01 | 100.0% | 75.0% |
| 396 | 2.2.1.8 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertus-S5-tox | 0.72 | 61.0 | 6.23e-01 | 94.0% | 94.9% |
| 3838219 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 53.0 | 5.73e-01 | 91.0% | 91.8% |
| 4449302 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 57.0 | 5.69e-01 | 100.0% | 82.9% |
| 3667340 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.70 | 61.0 | 5.65e-01 | 96.0% | 86.4% |
| 4504110 | 2484.1.1.197 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 | 0.68 | 58.0 | 3.79e-01 | 92.0% | 39.5% |
| 4942684 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 58.0 | 4.81e-01 | 92.0% | 99.4% |
| 3290541 | 243.3.1.3 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY | 0.68 | 35.0 | 4.27e-01 | 83.0% | 76.9% |
| 5000724 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 58.0 | 5.99e-01 | 99.0% | 100.0% |
| 2541776 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.68 | 57.0 | 5.60e-01 | 92.0% | 89.0% |
| 3970846 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 45.0 | 4.91e-01 | 87.0% | 85.0% |
| 5055355 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 56.0 | 5.84e-01 | 93.0% | 98.9% |
| 3807621 | 2.1.1.348 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223, Rep-A_N | 0.66 | 56.0 | 4.06e-01 | 93.0% | 36.7% |
| 3625857 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.65 | 56.0 | 5.12e-01 | 93.0% | 77.7% |
| 3853782 | 2.1.1.269 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30822 | 0.65 | 56.0 | 5.25e-01 | 97.0% | 77.5% |
| 2132960 | 2.2.1.4 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Pertussis_S2S3 | 0.65 | 59.0 | 5.68e-01 | 100.0% | 93.0% |
| 3750530 | 2.1.1.269 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30822 | 0.65 | 55.0 | 5.02e-01 | 98.0% | 68.9% |
| 3446499 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.64 | 56.0 | 5.24e-01 | 94.0% | 82.5% |
| 3366703 | 2.1.1.157 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 | 0.64 | 54.0 | 4.90e-01 | 92.0% | 73.3% |
| 3738365 | 2.1.1.128 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arb1 | 0.63 | 53.0 | 4.90e-01 | 96.0% | 71.5% |
| 3289334 | 2.2.1.0 ↗ | beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins | 0.63 | 52.0 | 4.01e-01 | 92.0% | 42.6% |
| 3870119 | 2.1.1.119 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB | 0.63 | 53.0 | 4.52e-01 | 93.0% | 57.6% |
| 3936392 | 101.1.12.3 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N | 0.61 | 52.0 | 4.58e-01 | 96.0% | 88.4% |
| 4945290 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 35.0 | 4.30e-01 | 85.0% | 93.3% |
| 3245132 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.59 | 39.0 | 3.63e-01 | 98.0% | 51.5% |
| 3289386 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 46.0 | 4.82e-01 | 88.0% | 95.5% |
| 2859147 | 7091.1.1.1 ↗ | a+b complex topology › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › C-terminal domain of DNA repair helicase RadD › PF29401 | 0.59 | 51.0 | 4.51e-01 | 97.0% | 71.3% |
| 3285635 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 47.0 | 4.82e-01 | 92.0% | 93.7% |
| 3968468 | 4152.2.1.0 ↗ | a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 | 0.57 | 39.0 | 4.34e-01 | 94.0% | 93.3% |
| 3315568 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.57 | 35.0 | 4.04e-01 | 84.0% | 87.1% |
| 3326324 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.56 | 34.0 | 3.92e-01 | 86.0% | 84.3% |
| 3291744 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.56 | 35.0 | 3.78e-01 | 85.0% | 76.2% |
| 3974494 | 330.1.1.34 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6348 | 0.56 | 37.0 | 3.80e-01 | 93.0% | 70.5% |
| 4330018 | 330.1.1.6 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C | 0.56 | 34.0 | 3.85e-01 | 84.0% | 81.3% |
| 3241023 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 42.0 | 2.74e-01 | 83.0% | 88.9% |
| 3961460 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 47.0 | 4.14e-01 | 99.0% | 83.3% |
| 3690464 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 33.0 | 2.67e-01 | 84.0% | 31.8% |
| 3609915 | 2484.8.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) › Peptidase_C50 | 0.53 | 44.0 | 3.17e-01 | 93.0% | 64.3% |
| 3246253 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 44.0 | 3.08e-01 | 95.0% | 52.1% |
| 3875879 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 40.0 | 3.30e-01 | 81.0% | 86.3% |
| 5023892 | 330.6.1.1 ↗ | a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer | 0.51 | 37.0 | 3.41e-01 | 76.0% | 89.1% |
D2
medium
residues 225-293
Domain cluster:
rep: IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_10002589__D37-104
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05847.19 best | Baculo_LEF-3 | 85.5 | 6.20e-24 | 98.6% | 20.9% |
D3
medium
residues 306-418
Domain cluster:
rep: LEF-3__YP_009249949__Mocis_latipes_granulovirus__2072024__D98-243
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05847.19 best | Baculo_LEF-3 | 128.8 | 4.10e-37 | 100.0% | 34.4% |