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LEF-3
Euk-VirOperophtera_brumata_nucleopolyhedrovirus
LEF-3__YP_009552623__Operophtera_brumata_nucleopolyhedrovirus__1046267
Identity
- Accession:
- YP_009552623 ↗
- Protein ID:
- LEF-3
- Kingdom:
- euk
Quality
76.0
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Operophtera_brumata_nucleopolyhedrovirus
TaxID: 1046267
Cluster
View cluster (42 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-97
Domain cluster:
rep: IMGVR_UViG_3300029825_000003-3300029825-Ga0134835_10002589__D37-104
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05847.19 best | Baculo_LEF-3 | 56.0 | 5.80e-15 | 98.6% | 19.0% |
D2
high
residues 111-247
Domain cluster:
rep: LEF-3__YP_009249949__Mocis_latipes_granulovirus__2072024__D98-243
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05847.19 best | Baculo_LEF-3 | 38.2 | 1.50e-09 | 100.0% | 35.0% |
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uapA00 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 45.0 | 4.64e-01 | 84.7% | 67.9% |
| 1u5kA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 40.0 | 5.01e-01 | 87.6% | 95.1% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 26.0 | 3.86e-01 | 83.9% | 76.2% |
| 2k50A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 48.0 | 5.41e-01 | 91.2% | 94.2% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.67 | 48.0 | 5.26e-01 | 91.2% | 92.7% |
| 2k5vA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 44.0 | 5.05e-01 | 90.5% | 92.9% |
| 3f2bA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 44.0 | 5.07e-01 | 89.8% | 96.9% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.65 | 36.0 | 4.73e-01 | 84.7% | 100.0% |
| 1xweA01 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 45.0 | 4.43e-01 | 85.4% | 66.4% |
| 3f1zI00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 47.0 | 5.07e-01 | 88.3% | 87.9% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 51.0 | 5.53e-01 | 95.6% | 99.1% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 26.0 | 3.61e-01 | 81.8% | 74.2% |
| 1xjvA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 56.0 | 5.47e-01 | 97.1% | 98.7% |
| 6ipaA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 41.0 | 3.84e-01 | 86.1% | 56.4% |
| 1eujA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 41.0 | 3.86e-01 | 86.1% | 57.3% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 35.0 | 4.35e-01 | 81.8% | 100.0% |
| 1pxfA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 40.0 | 4.43e-01 | 86.9% | 86.5% |
| 1jb3A00 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 42.0 | 4.37e-01 | 84.7% | 79.5% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 26.0 | 3.63e-01 | 100.0% | 87.3% |
| 1tr8A01 | 2.20.70.30 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain | 0.55 | 24.0 | 3.35e-01 | 87.6% | 94.2% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 37.0 | 3.95e-01 | 75.2% | 100.0% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3822463 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.77 | 44.0 | 5.61e-01 | 83.2% | 96.2% |
| 3553702 | 2.1.1.250 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30827 | 0.72 | 44.0 | 5.25e-01 | 86.1% | 92.2% |
| 3655401 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 44.0 | 5.28e-01 | 88.3% | 93.3% |
| 5020457 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 53.0 | 5.90e-01 | 95.6% | 97.3% |
| 5035149 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 46.0 | 5.51e-01 | 84.7% | 95.8% |
| 5050059 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 50.0 | 5.40e-01 | 89.8% | 86.1% |
| 3931676 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.71 | 55.0 | 5.70e-01 | 100.0% | 89.6% |
| 3427031 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 41.0 | 4.34e-01 | 84.7% | 63.2% |
| 4680169 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.70 | 50.0 | 5.64e-01 | 96.4% | 95.2% |
| 5051437 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.70 | 51.0 | 5.73e-01 | 91.2% | 97.1% |
| 4967296 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.70 | 49.0 | 5.65e-01 | 91.2% | 98.0% |
| 4931879 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.70 | 48.0 | 5.54e-01 | 89.8% | 96.0% |
| 4032678 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.70 | 49.0 | 5.57e-01 | 94.2% | 97.0% |
| 4642580 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 50.0 | 5.67e-01 | 96.4% | 96.2% |
| 5004108 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 48.0 | 5.49e-01 | 89.8% | 96.0% |
| 4982873 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.69 | 48.0 | 5.44e-01 | 90.5% | 93.3% |
| 4981503 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.69 | 47.0 | 5.53e-01 | 89.8% | 100.0% |
| 4985272 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.69 | 49.0 | 5.53e-01 | 91.2% | 95.2% |
| 4974920 | 2.1.1.76 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 | 0.69 | 47.0 | 5.45e-01 | 89.8% | 96.0% |
| 4948168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 52.0 | 5.76e-01 | 94.2% | 98.2% |
| 5020459 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 47.0 | 5.45e-01 | 89.8% | 97.0% |
| 3608487 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 48.0 | 5.35e-01 | 83.9% | 92.4% |
| 5050058 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 53.0 | 4.85e-01 | 94.9% | 62.9% |
| 3600626 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.69 | 48.0 | 5.50e-01 | 84.7% | 98.0% |
| 5081845 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 47.0 | 5.46e-01 | 90.5% | 97.0% |
| 3918890 | 2.1.1.250 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30827 | 0.68 | 43.0 | 4.44e-01 | 88.3% | 66.2% |
| 3268620 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.68 | 48.0 | 5.27e-01 | 91.2% | 90.0% |
| 4951394 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.68 | 46.0 | 5.30e-01 | 90.5% | 95.0% |
| 4975879 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 52.0 | 5.73e-01 | 95.6% | 100.0% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.67 | 26.0 | 3.82e-01 | 86.9% | 76.9% |
| 4272864 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.67 | 48.0 | 5.14e-01 | 91.2% | 84.2% |
| 5057108 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.67 | 50.0 | 5.46e-01 | 94.9% | 93.0% |
| 5051436 | 2.1.1.123 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 | 0.67 | 53.0 | 5.50e-01 | 94.9% | 90.4% |
| 4402756 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.67 | 53.0 | 5.65e-01 | 95.6% | 95.0% |
| 4982872 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.66 | 50.0 | 5.52e-01 | 94.2% | 98.2% |
| 5016163 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.66 | 48.0 | 5.33e-01 | 92.0% | 93.6% |
| 4975880 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.66 | 52.0 | 5.60e-01 | 96.4% | 98.3% |
| 3893747 | 2.3.1.2 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › NTR | 0.65 | 45.0 | 4.44e-01 | 86.1% | 64.7% |
| 4046343 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.65 | 39.0 | 4.60e-01 | 83.9% | 88.9% |
| 4051625 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.64 | 25.0 | 3.61e-01 | 81.8% | 75.4% |
| 3243150 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 36.0 | 4.59e-01 | 86.9% | 98.7% |
| 4930094 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.64 | 48.0 | 5.35e-01 | 92.7% | 100.0% |
| 4564797 | 2.1.1.123 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 | 0.64 | 51.0 | 5.41e-01 | 95.6% | 95.0% |
| 3705431 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 51.0 | 5.51e-01 | 85.4% | 100.0% |
| 4127161 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.64 | 44.0 | 5.06e-01 | 84.7% | 98.0% |
| 3601108 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 47.0 | 5.24e-01 | 90.5% | 100.0% |
| 3945427 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.63 | 38.0 | 4.59e-01 | 89.8% | 95.3% |
| 3937309 | 2.1.1.119 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB | 0.63 | 48.0 | 4.46e-01 | 93.4% | 62.9% |
| 4091312 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.63 | 37.0 | 4.48e-01 | 87.6% | 92.9% |
| 4058606 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.62 | 37.0 | 4.43e-01 | 87.6% | 88.9% |
| 4048745 | 2.1.1.26 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB | 0.61 | 37.0 | 4.40e-01 | 88.3% | 91.1% |
| 3762912 | 2.1.1.256 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF31101 | 0.61 | 54.0 | 4.88e-01 | 95.6% | 74.6% |
| 3583095 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.61 | 43.0 | 4.90e-01 | 85.4% | 99.0% |
| 3791987 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.60 | 46.0 | 4.99e-01 | 92.7% | 96.5% |
| 3513469 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 51.0 | 5.06e-01 | 94.9% | 96.6% |
| 3362433 | 2.1.1.250 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30827 | 0.58 | 45.0 | 4.75e-01 | 95.6% | 89.6% |
| 5042375 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.57 | 33.0 | 4.12e-01 | 79.6% | 100.0% |
| 1954221 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.57 | 33.0 | 4.10e-01 | 83.2% | 100.0% |
| 4882592 | 2.1.1.1 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 | 0.57 | 41.0 | 4.08e-01 | 89.1% | 71.2% |
| 3692564 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.56 | 51.0 | 3.63e-01 | 99.3% | 58.5% |
| 159268 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 49.0 | 4.27e-01 | 94.9% | 93.7% |
| 3472467 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.55 | 30.0 | 3.88e-01 | 89.1% | 94.7% |
| 3483729 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 39.0 | 4.16e-01 | 75.2% | 100.0% |
| 3853779 | 2.1.1.250 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30827 | 0.53 | 44.0 | 4.22e-01 | 94.9% | 76.1% |
D3
high
residues 251-343