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LEF-4
Euk-VirAdoxophyes_orana_nucleopolyhedrovirus
LEF-4__YP_002300583__Adoxophyes_orana_nucleopolyhedrovirus__542343
Identity
- Accession:
- YP_002300583 ↗
- Protein ID:
- LEF-4
- Kingdom:
- euk
Quality
82.9
mean pLDDT
Taxonomy
TaxID: 542343
Cluster
View cluster (54 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 214-397
Domain cluster:
rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D219-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 258.1 | 2.50e-76 | 100.0% | 40.0% |
D2
high
residues 401-451
Domain cluster:
rep: lef4__YP_002854687__Euproctis_pseudoconspersa_nucleopolyhedrovirus__307467__D411-465
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 47.2 | 2.40e-12 | 100.0% | 11.2% |
D3
medium
residues 5-18_43-101
Domain cluster:
rep: lef-4__YP_009112642__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D1-12_46-93
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 43.5 | 3.20e-11 | 97.3% | 13.2% |
CATH (53)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h2qB01 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.67 | 50.0 | 3.57e-01 | 90.4% | 27.4% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 54.0 | 4.29e-01 | 93.2% | 89.8% |
| 3rtyB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 51.0 | 4.52e-01 | 91.8% | 99.1% |
| 2w9hA00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.61 | 44.0 | 3.38e-01 | 87.7% | 34.4% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 45.0 | 4.44e-01 | 91.8% | 71.2% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.61 | 47.0 | 4.45e-01 | 89.0% | 69.8% |
| 3rt0C00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 50.0 | 3.85e-01 | 93.2% | 70.9% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.60 | 49.0 | 4.36e-01 | 91.8% | 69.7% |
| 2pokA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 51.0 | 3.86e-01 | 91.8% | 80.0% |
| 3ix9A00 | 3.40.430.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A | 0.59 | 43.0 | 3.27e-01 | 89.0% | 33.7% |
| 3zfvA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 49.0 | 3.84e-01 | 93.2% | 69.2% |
| 1svbA01 | 2.60.98.10 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 | 0.58 | 49.0 | 3.97e-01 | 91.8% | 81.6% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.58 | 52.0 | 3.76e-01 | 100.0% | 49.0% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.58 | 45.0 | 4.03e-01 | 91.8% | 60.6% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.58 | 50.0 | 3.47e-01 | 98.6% | 46.7% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.57 | 47.0 | 3.58e-01 | 91.8% | 74.3% |
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.56 | 48.0 | 3.73e-01 | 93.2% | 66.0% |
| 3sm3A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.37e-01 | 91.8% | 46.2% |
| 4bsjA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 3.83e-01 | 90.4% | 64.2% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 42.0 | 2.96e-01 | 91.8% | 26.9% |
| 3bczA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.55 | 45.0 | 3.03e-01 | 91.8% | 88.1% |
| 3klxB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 45.0 | 3.42e-01 | 93.2% | 67.4% |
| 4r6uA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 40.0 | 3.56e-01 | 93.2% | 55.3% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.54 | 43.0 | 3.58e-01 | 93.2% | 92.7% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 45.0 | 3.83e-01 | 90.4% | 66.4% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.54 | 44.0 | 3.86e-01 | 89.0% | 61.3% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.54 | 43.0 | 3.73e-01 | 91.8% | 69.9% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 45.0 | 3.82e-01 | 91.8% | 77.3% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.54 | 41.0 | 2.59e-01 | 83.6% | 90.4% |
| 1dpbA00 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.53 | 42.0 | 3.04e-01 | 90.4% | 73.3% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 39.0 | 3.76e-01 | 91.8% | 66.7% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 43.0 | 3.66e-01 | 90.4% | 56.5% |
| 5k8mA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.67e-01 | 91.8% | 74.0% |
| 3n5fA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.82e-01 | 91.8% | 69.3% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.67e-01 | 91.8% | 69.5% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 44.0 | 3.83e-01 | 90.4% | 72.2% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.52 | 42.0 | 3.46e-01 | 91.8% | 60.1% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.52 | 43.0 | 3.87e-01 | 91.8% | 65.0% |
| 7zgmA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 42.0 | 3.07e-01 | 95.9% | 84.8% |
| 5uejA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 45.0 | 3.87e-01 | 94.5% | 73.7% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 42.0 | 3.46e-01 | 93.2% | 81.2% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.52 | 42.0 | 3.50e-01 | 91.8% | 49.3% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 43.0 | 3.53e-01 | 95.9% | 78.2% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 35.0 | 3.45e-01 | 91.8% | 65.4% |
| 2bi0A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 38.0 | 3.08e-01 | 78.1% | 84.4% |
| 3l60A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.51 | 41.0 | 3.03e-01 | 91.8% | 81.4% |
| 4iyqA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.79e-01 | 93.2% | 98.1% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.69e-01 | 87.7% | 63.6% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.51 | 40.0 | 3.22e-01 | 87.7% | 52.3% |
| 4c98A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 3.47e-01 | 94.5% | 70.8% |
| 3tx8A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 42.0 | 3.61e-01 | 90.4% | 71.9% |
| 3io1A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 43.0 | 3.66e-01 | 93.2% | 70.7% |
| 1lmiA00 | 2.60.40.1240 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.44e-01 | 93.2% | 51.1% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3253396 | 868.1.1.2 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA_triPase | 0.75 | 67.0 | 4.77e-01 | 97.3% | 53.2% |
| 4670273 | 868.1.1.8 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C | 0.69 | 61.0 | 4.21e-01 | 100.0% | 59.9% |
| 4118093 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.69 | 58.0 | 4.55e-01 | 93.2% | 86.5% |
| 4968263 | 1.1.5.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C | 0.68 | 57.0 | 4.09e-01 | 93.2% | 70.5% |
| 901 | 4252.1.1.1 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › CrtC | 0.68 | 50.0 | 3.70e-01 | 78.1% | 75.7% |
| 3602499 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.67 | 55.0 | 4.56e-01 | 90.4% | 72.3% |
| 5027270 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.67 | 55.0 | 4.18e-01 | 90.4% | 61.1% |
| 4988254 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.67 | 55.0 | 4.21e-01 | 93.2% | 77.2% |
| 4419940 | 58.2.1.0 ↗ | beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain | 0.67 | 56.0 | 4.49e-01 | 93.2% | 64.9% |
| 3970088 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 51.0 | 4.65e-01 | 93.2% | 62.1% |
| 4132429 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.66 | 57.0 | 3.88e-01 | 93.2% | 31.0% |
| 5067070 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.66 | 53.0 | 4.28e-01 | 87.7% | 70.7% |
| 3946057 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.65 | 53.0 | 3.77e-01 | 90.4% | 34.5% |
| 4659258 | 2003.1.5.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT | 0.65 | 57.0 | 3.95e-01 | 93.2% | 32.6% |
| 3974775 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.64 | 49.0 | 4.53e-01 | 94.5% | 63.2% |
| 3719492 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.64 | 54.0 | 3.52e-01 | 91.8% | 37.7% |
| 3603456 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.64 | 53.0 | 4.91e-01 | 91.8% | 71.1% |
| 2892215 | 5091.1.1.1 ↗ | beta sandwiches › VP4 membrane interaction domain › VP4 membrane interaction domain › VP4 membrane interaction domain › Rota_VP4_MID | 0.64 | 53.0 | 3.77e-01 | 93.2% | 38.3% |
| 4029744 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.64 | 56.0 | 4.49e-01 | 98.6% | 72.4% |
| 3623538 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.64 | 52.0 | 3.93e-01 | 91.8% | 36.7% |
| 3972051 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 50.0 | 4.11e-01 | 93.2% | 48.5% |
| 3626286 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.63 | 52.0 | 4.31e-01 | 95.9% | 85.7% |
| 4946915 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 45.0 | 3.95e-01 | 91.8% | 52.4% |
| 3665392 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 47.0 | 3.95e-01 | 93.2% | 50.0% |
| 4953567 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.60 | 45.0 | 4.44e-01 | 93.2% | 73.8% |
| 3481772 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.60 | 49.0 | 4.20e-01 | 91.8% | 74.0% |
| 4955179 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.60 | 49.0 | 4.12e-01 | 91.8% | 72.3% |
| 5053266 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.60 | 48.0 | 3.81e-01 | 90.4% | 93.1% |
| 4888780 | 304.124.1.5 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss | 0.60 | 49.0 | 3.49e-01 | 91.8% | 36.3% |
| 3667432 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 47.0 | 4.32e-01 | 93.2% | 65.3% |
| 4944896 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.59 | 48.0 | 4.10e-01 | 93.2% | 74.2% |
| 3943282 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.59 | 48.0 | 4.12e-01 | 90.4% | 58.3% |
| 3587074 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.59 | 49.0 | 4.34e-01 | 94.5% | 72.7% |
| 3687709 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.59 | 50.0 | 3.48e-01 | 91.8% | 33.8% |
| 3766159 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.58 | 46.0 | 3.52e-01 | 91.8% | 83.6% |
| 3589403 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.58 | 46.0 | 3.85e-01 | 87.7% | 51.7% |
| 4309280 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.58 | 48.0 | 3.96e-01 | 93.2% | 68.1% |
| 5024124 | 304.15.1.0 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain | 0.58 | 42.0 | 4.15e-01 | 93.2% | 72.5% |
| 5052888 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 50.0 | 4.24e-01 | 100.0% | 74.4% |
| 4964127 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.57 | 45.0 | 3.55e-01 | 90.4% | 72.9% |
| 3802659 | 304.8.1.66 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 | 0.57 | 46.0 | 4.09e-01 | 93.2% | 61.9% |
| 4929266 | 872.1.1.2 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › Dodecin | 0.57 | 44.0 | 4.54e-01 | 91.8% | 87.1% |
| 5070955 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.56 | 45.0 | 3.73e-01 | 91.8% | 73.6% |
| 3956950 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.56 | 46.0 | 3.80e-01 | 94.5% | 65.7% |
| 3189776 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.55 | 48.0 | 3.72e-01 | 93.2% | 76.0% |
| 3993477 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 47.0 | 3.44e-01 | 93.2% | 65.0% |
| 3189683 | 331.3.1.46 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF7053 | 0.55 | 43.0 | 3.25e-01 | 89.0% | 85.4% |
| 5050287 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.55 | 41.0 | 3.90e-01 | 91.8% | 66.7% |
| 3540649 | 11.1.1.789 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › KIAA1549 | 0.55 | 45.0 | 3.86e-01 | 90.4% | 65.0% |
| 3995786 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.55 | 44.0 | 4.64e-01 | 93.2% | 100.0% |
| 4974938 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.55 | 45.0 | 3.27e-01 | 91.8% | 39.2% |
| 3418881 | 304.8.1.66 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 | 0.55 | 45.0 | 3.96e-01 | 93.2% | 60.0% |
| 3892200 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.55 | 38.0 | 2.80e-01 | 75.3% | 78.3% |
| 2674670 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.54 | 44.0 | 3.51e-01 | 95.9% | 47.7% |
| 5077618 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.54 | 44.0 | 3.67e-01 | 89.0% | 73.6% |
| 3602774 | 304.51.1.8 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C | 0.54 | 43.0 | 3.81e-01 | 91.8% | 73.9% |
| 4928530 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.54 | 40.0 | 3.93e-01 | 87.7% | 75.0% |
| 4992590 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.53 | 42.0 | 3.35e-01 | 93.2% | 62.3% |
| 3559952 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.53 | 37.0 | 2.72e-01 | 76.7% | 78.3% |
| 5077058 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.53 | 43.0 | 3.59e-01 | 89.0% | 73.6% |
| 4940026 | 4081.1.1.17 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF7345 | 0.52 | 42.0 | 3.26e-01 | 90.4% | 51.4% |
| 3279365 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.52 | 42.0 | 3.08e-01 | 91.8% | 35.8% |
| 3270041 | 872.3.1.7 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 | 0.52 | 44.0 | 3.95e-01 | 97.3% | 79.0% |
| 4663897 | 12.1.1.43 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 | 0.51 | 41.0 | 3.55e-01 | 90.4% | 67.5% |
| 2325211 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 38.0 | 3.02e-01 | 83.6% | 78.4% |
| 4936600 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.50 | 40.0 | 3.55e-01 | 93.2% | 75.0% |
D4
medium
residues 19-42_102-205
Domain cluster:
rep: lef-4__YP_009112642__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D13-45_94-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 120.4 | 1.50e-34 | 81.2% | 22.6% |