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LEF-4

Euk-Vir

Artogeia_rapae_granulovirus

LEF-4__YP_003429404__Artogeia_rapae_granulovirus__362830

Identity

Accession:
YP_003429404 ↗
Protein ID:
LEF-4
Kingdom:
euk

Quality

80.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-202
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 234.5 3.70e-69 98.0% 43.6%
D2 high residues 214-278_310-410
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 205.3 2.60e-60 100.0% 38.0%
D3 high residues 423-470
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 30.3 3.20e-07 100.0% 11.4%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5wrtB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.89 79.0 4.95e-01 97.9% 50.9%
1go3E01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.86 77.0 6.13e-01 100.0% 87.2%
5teaB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.85 75.0 5.00e-01 97.9% 55.7%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.85 74.0 6.86e-01 95.8% 96.7%
3go5A01 2.40.50.330 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 71.0 6.24e-01 95.8% 77.5%
1u0lA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 74.0 6.73e-01 100.0% 95.3%
3go5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 71.0 6.03e-01 97.9% 82.3%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 73.0 6.30e-01 100.0% 86.3%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 73.0 6.12e-01 100.0% 79.7%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 72.0 6.52e-01 100.0% 90.8%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 70.0 6.06e-01 97.9% 94.5%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 71.0 5.47e-01 100.0% 72.1%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.79 71.0 5.81e-01 100.0% 88.4%
2qw7C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.78 70.0 5.55e-01 100.0% 85.3%
2exdA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 67.0 5.88e-01 100.0% 70.3%
3cp0A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 67.0 6.20e-01 100.0% 88.9%
3wwvA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 68.0 6.17e-01 100.0% 84.4%
3fvqA02 2.40.50.450 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 59.0 6.09e-01 83.3% 90.9%
2k5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 67.0 5.86e-01 100.0% 74.0%
2k14A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 65.0 5.49e-01 100.0% 71.4%
3k0xA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 65.0 5.16e-01 100.0% 61.6%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 64.0 4.65e-01 100.0% 58.4%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 61.0 4.93e-01 100.0% 60.8%
1yezA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 61.0 5.52e-01 97.9% 77.9%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 60.0 4.99e-01 100.0% 78.3%
7lmaF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 60.0 5.02e-01 100.0% 63.2%
1z47A02 2.40.50.300 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 54.0 5.51e-01 100.0% 100.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 50.0 4.51e-01 100.0% 61.8%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 54.0 5.13e-01 100.0% 84.5%
1v4pA02 3.30.54.20 Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › 0.58 46.0 4.63e-01 97.9% 93.6%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.53 41.0 3.94e-01 97.9% 100.0%
2v5nA02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 37.0 2.75e-01 100.0% 27.4%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 3.57e-01 93.8% 93.3%
1w4bA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.53e-01 85.4% 72.1%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4956851 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.91 78.0 7.00e-01 93.8% 84.6%
5037071 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.90 76.0 7.29e-01 91.7% 98.2%
4986053 2.1.1.21 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.90 80.0 6.83e-01 97.9% 73.3%
4161829 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.88 80.0 6.81e-01 100.0% 76.0%
4067858 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.88 81.0 7.04e-01 100.0% 92.9%
4250218 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.88 76.0 6.89e-01 95.8% 95.3%
5026108 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.88 77.0 7.12e-01 95.8% 90.0%
4088295 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.87 80.0 6.63e-01 100.0% 77.5%
4083610 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.87 76.0 6.83e-01 95.8% 95.4%
4062332 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.87 76.0 6.81e-01 95.8% 92.3%
4131641 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.87 76.0 7.15e-01 95.8% 94.8%
4379699 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.87 74.0 6.71e-01 95.8% 92.3%
2768809 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.86 77.0 6.85e-01 100.0% 88.1%
4338421 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.85 74.0 6.63e-01 95.8% 96.9%
4330070 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.85 76.0 4.51e-01 97.9% 19.4%
4583050 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.85 78.0 6.76e-01 100.0% 80.0%
3403141 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.85 76.0 6.46e-01 97.9% 81.3%
4400854 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.85 71.0 6.59e-01 91.7% 96.7%
5040373 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.85 74.0 6.52e-01 97.9% 72.9%
4156740 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.85 72.0 7.18e-01 93.8% 96.0%
4376165 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.85 73.0 6.78e-01 95.8% 95.0%
5042551 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 74.0 6.68e-01 95.8% 85.7%
4215880 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.84 74.0 6.51e-01 97.9% 92.8%
4301110 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.84 70.0 6.30e-01 91.7% 98.5%
5071102 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 74.0 5.79e-01 100.0% 58.0%
4200681 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 71.0 6.58e-01 93.8% 91.7%
4994604 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.84 75.0 5.29e-01 100.0% 47.1%
4957842 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.83 74.0 6.83e-01 97.9% 91.7%
4939170 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.83 69.0 5.66e-01 91.7% 61.2%
3283412 2.1.1.98 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNase_II_C_S1 0.83 70.0 6.51e-01 93.8% 95.0%
5006052 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 71.0 6.43e-01 95.8% 84.4%
4932278 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 70.0 6.46e-01 93.8% 91.7%
4361731 2.1.1.73 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N 0.81 72.0 6.52e-01 100.0% 92.3%
5069936 2.1.1.16 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.81 72.0 4.77e-01 100.0% 44.7%
4931880 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 71.0 6.27e-01 100.0% 78.6%
4991825 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 71.0 5.96e-01 100.0% 73.8%
4956338 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 69.0 6.41e-01 97.9% 90.0%
5042160 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 69.0 6.47e-01 100.0% 91.7%
4304764 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.78 67.0 5.09e-01 100.0% 88.2%
5081375 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.78 68.0 6.06e-01 100.0% 78.6%
4250478 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.78 68.0 4.97e-01 100.0% 96.2%
5019244 2.1.1.381 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28043 0.78 67.0 5.84e-01 100.0% 98.7%
3970949 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.78 68.0 5.14e-01 100.0% 92.2%
5044778 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.78 66.0 4.05e-01 97.9% 18.4%
4221644 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.77 68.0 6.03e-01 100.0% 77.1%
390 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.77 67.0 5.93e-01 100.0% 72.2%
5077797 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.77 68.0 6.18e-01 100.0% 83.1%
5039058 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.77 67.0 6.28e-01 100.0% 88.3%
3587260 2.1.1.262 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF31148 0.77 68.0 5.73e-01 100.0% 77.5%
370565 2.4.1.8 beta barrels › OB-fold › MOP-like › MOP-like › FbpC-like_RD 0.77 58.0 5.85e-01 83.3% 81.6%
3974652 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.76 66.0 6.19e-01 100.0% 91.7%
199611 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.76 67.0 5.78e-01 100.0% 71.1%
3963655 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.76 64.0 5.92e-01 100.0% 84.6%
5071470 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.76 66.0 5.86e-01 100.0% 77.1%
4493460 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.76 65.0 5.05e-01 100.0% 94.5%
5035058 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.76 66.0 6.00e-01 100.0% 83.1%
5041943 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 65.0 5.46e-01 100.0% 75.3%
4377440 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 61.0 5.87e-01 91.7% 90.9%
5057061 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 65.0 5.81e-01 100.0% 77.1%
5027166 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.75 65.0 5.71e-01 100.0% 73.0%
4963308 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.75 62.0 3.75e-01 95.8% 16.7%
5083197 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.75 65.0 5.77e-01 100.0% 77.1%
4424090 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 64.0 5.63e-01 100.0% 78.7%
5065712 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.75 65.0 5.78e-01 100.0% 77.1%
5009353 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.75 65.0 5.77e-01 100.0% 77.1%
5010778 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 62.0 4.72e-01 91.7% 43.8%
4962650 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 62.0 5.97e-01 97.9% 94.5%
4242535 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.74 52.0 5.50e-01 75.0% 90.0%
4237578 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.73 60.0 4.68e-01 100.0% 98.3%
5083525 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.73 62.0 3.77e-01 100.0% 17.8%
5082075 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 63.0 5.00e-01 100.0% 80.0%
3944705 2.1.1.19 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD 0.71 58.0 5.21e-01 100.0% 70.7%
4951344 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 61.0 4.61e-01 100.0% 95.7%
3711282 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 59.0 5.73e-01 97.9% 96.4%
5064403 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 55.0 4.91e-01 95.8% 82.7%
4331761 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 58.0 4.46e-01 97.9% 98.3%
4047622 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.69 57.0 4.44e-01 95.8% 95.5%
4049072 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.67 56.0 4.43e-01 100.0% 98.2%
3164387 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.66 50.0 5.15e-01 83.3% 88.9%
3963647 2.8.1.0 beta barrels › OB-fold › mu transposases-C › mu transposases-C 0.64 54.0 4.81e-01 100.0% 74.7%
4230177 2.8.1.2 beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 0.59 48.0 4.37e-01 100.0% 67.1%
3254502 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.55 46.0 3.79e-01 97.9% 50.5%
3257783 63.1.1.0 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain 0.53 42.0 3.31e-01 100.0% 77.7%
3231090 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.50 38.0 3.28e-01 89.6% 78.9%