←Back to structures

LEF-4

Euk-Vir

Choristoneura_rosaceana_nucleopolyhedrovirus

LEF-4__YP_008378417__Choristoneura_rosaceana_nucleopolyhedrovirus__58094

Identity

Accession:: YP_008378417 ↗
Protein ID:: LEF-4
Kingdom:: euk

Quality

81.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Choristoneura_rosaceana_nucleopolyhedrovirus

TaxID: 58094

Cluster

View cluster (54 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 214-391

PDB

Domain cluster: rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D219-367

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05098.19 best	LEF-4	213.2	1.00e-62	100.0%	39.8%

D2 high residues 396-446

PDB

Domain cluster: rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D410-458

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05098.19 best	LEF-4	44.6	1.50e-11	100.0%	11.4%

D3 medium residues 1-16_60-92_170-207

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2j5aA00	3.30.70.60	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B	0.67	46.0	4.35e-01	71.3%	96.2%
6gdxA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.59	40.0	3.77e-01	70.1%	84.1%
1tz0B00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	38.0	3.68e-01	70.1%	96.9%
4y6iA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	37.0	3.59e-01	70.1%	83.5%
1t82A00	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.55	34.0	2.95e-01	90.8%	38.7%
2v0uA00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.54	43.0	3.67e-01	87.4%	91.1%
6kf9G01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	27.0	2.81e-01	83.9%	50.0%
4ozjA00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	36.0	3.50e-01	71.3%	83.7%
1ekrA00	3.30.70.640	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain	0.53	38.0	3.23e-01	74.7%	92.3%
5egjA00	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.53	42.0	3.45e-01	87.4%	62.3%
4llfD02	2.60.40.4030	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	36.0	3.28e-01	73.6%	65.0%
6ofsA04	3.30.830.10	Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like	0.51	39.0	3.06e-01	81.6%	63.6%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3495445	304.9.1.1 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1	0.69	52.0	3.36e-01	79.3%	27.0%
4029744	304.112.1.0 ↗	a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain	0.67	46.0	3.83e-01	70.1%	97.9%
4411078	304.12.1.1 ↗	a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6	0.65	45.0	4.32e-01	70.1%	99.0%
3255400	207.1.1.0 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats	0.63	32.0	2.04e-01	83.9%	10.8%
3970088	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.62	43.0	4.19e-01	71.3%	96.8%
4936511	304.133.1.1 ↗	a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL	0.62	42.0	3.93e-01	70.1%	96.4%
3971017	304.133.1.1 ↗	a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL	0.61	41.0	3.83e-01	70.1%	89.1%
3271482	210.1.3.5 ↗	a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7	0.59	45.0	3.32e-01	81.6%	92.5%
4002360	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.52	39.0	2.92e-01	82.8%	97.1%
4103142	284.1.3.0 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain	0.51	29.0	3.00e-01	75.9%	57.5%
5078578	304.51.1.0 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related	0.51	39.0	3.36e-01	82.8%	91.0%

D4 medium residues 17-59_93-151

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05098.19 best	LEF-4	34.4	1.90e-08	56.9%	12.5%
PF05098.19	LEF-4	40.5	2.60e-10	47.1%	9.2%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qrdB01	2.20.25.290	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.59	24.0	3.50e-01	76.5%	97.3%
3l5iA03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.58	38.0	4.07e-01	87.3%	78.4%
4inaA02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.56	44.0	3.56e-01	84.3%	96.4%
2rs7A01	3.30.160.20	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.55	32.0	3.59e-01	74.5%	77.0%
1ye9A02	2.40.470.10	Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain	0.54	36.0	3.55e-01	93.1%	61.6%
3f6gA01	3.30.160.740	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain ›	0.53	25.0	3.06e-01	82.4%	70.7%
3ulbA01	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.52	32.0	3.45e-01	99.0%	74.7%
4htgA03	3.30.160.40	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain	0.52	27.0	3.05e-01	86.3%	63.3%
5jtwA05	2.60.40.1930	Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain	0.52	41.0	3.88e-01	84.3%	90.9%
2rqlA00	3.30.160.100	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like	0.51	27.0	2.87e-01	90.2%	52.6%
1oo0A00	3.30.1560.10	Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi	0.51	39.0	3.48e-01	81.4%	88.9%
4depC02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	36.0	3.61e-01	90.2%	72.5%
2l7eA00	2.60.40.1970	Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain	0.50	33.0	3.12e-01	78.4%	54.5%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5052285	220.1.1.0 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like	0.62	38.0	3.77e-01	98.0%	58.1%
3904085	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.62	39.0	4.53e-01	87.3%	90.0%
4931364	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.61	29.0	3.08e-01	79.4%	47.8%
3486954	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.57	34.0	3.70e-01	76.5%	71.8%
4014375	3256.1.1.0 ↗	a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain	0.56	29.0	3.70e-01	83.3%	96.0%
4026006	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.56	33.0	3.62e-01	76.5%	72.5%
3590547	2484.1.1.67 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3	0.56	27.0	2.54e-01	84.3%	33.8%
4961043	11.1.4.23 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg	0.54	36.0	3.86e-01	91.2%	78.9%
5061444	11.1.4.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like	0.54	33.0	3.61e-01	88.2%	74.1%
3552986	11.1.1.275 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL3Ra_N	0.53	37.0	4.06e-01	73.5%	94.1%
5036579	2011.2.1.7 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2	0.52	36.0	2.72e-01	80.4%	29.4%
3603056	330.4.1.1 ↗	a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC	0.52	28.0	3.19e-01	86.3%	68.0%
5076824	206.1.1.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase	0.52	46.0	3.20e-01	100.0%	60.8%
3404941	220.1.1.15 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › BBL5	0.52	40.0	3.38e-01	100.0%	49.4%
5067357	2011.2.1.7 ↗	a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2	0.51	34.0	2.65e-01	80.4%	30.0%