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LEF-4
Euk-VirMocis_latipes_granulovirus
LEF-4__YP_009249928__Mocis_latipes_granulovirus__2072024
Identity
- Accession:
- YP_009249928 ↗
- Protein ID:
- LEF-4
- Kingdom:
- euk
Quality
83.7
mean pLDDT
Taxonomy
TaxID: 2072024
Cluster
View cluster (54 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 208-385
Domain cluster:
rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D219-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 192.3 | 2.30e-56 | 100.0% | 39.8% |
D2
high
residues 390-439
Domain cluster:
rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D410-458
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 35.5 | 8.90e-09 | 100.0% | 11.4% |
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eqsA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.82 | 73.0 | 6.01e-01 | 100.0% | 84.3% |
| 1u0lA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 72.0 | 6.63e-01 | 100.0% | 95.3% |
| 1k3rA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 71.0 | 6.72e-01 | 98.0% | 89.8% |
| 1t9hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.80 | 71.0 | 6.26e-01 | 100.0% | 86.3% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.79 | 55.0 | 5.75e-01 | 74.0% | 100.0% |
| 2qgqA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 68.0 | 6.42e-01 | 96.0% | 96.7% |
| 3cp0A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 69.0 | 6.38e-01 | 100.0% | 88.9% |
| 4oonA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.78 | 68.0 | 5.38e-01 | 100.0% | 72.1% |
| 3zjyC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.77 | 68.0 | 5.99e-01 | 100.0% | 79.7% |
| 3d0fA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 67.0 | 5.94e-01 | 100.0% | 95.9% |
| 3fvqA02 | 2.40.50.450 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.76 | 57.0 | 5.97e-01 | 84.0% | 90.9% |
| 2exdA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.76 | 66.0 | 5.82e-01 | 100.0% | 70.3% |
| 3k0xA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 65.0 | 5.23e-01 | 100.0% | 61.6% |
| 2k14A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 65.0 | 5.50e-01 | 100.0% | 71.4% |
| 3wwvA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 65.0 | 6.03e-01 | 100.0% | 84.4% |
| 6tnyB02 | 2.40.50.430 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.74 | 64.0 | 4.99e-01 | 100.0% | 64.3% |
| 4pz7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.74 | 65.0 | 4.76e-01 | 100.0% | 58.4% |
| 2k5hA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 64.0 | 5.72e-01 | 100.0% | 74.0% |
| 1uwvA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.73 | 63.0 | 5.65e-01 | 100.0% | 74.0% |
| 4tquS02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.72 | 62.0 | 5.79e-01 | 100.0% | 84.4% |
| 1dgsA04 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.71 | 62.0 | 5.48e-01 | 100.0% | 98.6% |
| 2k50A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.70 | 57.0 | 4.70e-01 | 100.0% | 81.7% |
| 1g29103 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.69 | 60.0 | 5.58e-01 | 100.0% | 84.6% |
| 7lmaF01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.69 | 58.0 | 4.96e-01 | 100.0% | 63.2% |
| 1yezA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 58.0 | 5.29e-01 | 98.0% | 77.9% |
| 1z47A02 | 2.40.50.300 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 52.0 | 5.43e-01 | 100.0% | 100.0% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 49.0 | 4.47e-01 | 100.0% | 61.8% |
| 3frnA03 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 41.0 | 4.11e-01 | 72.0% | 96.1% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.58 | 46.0 | 4.37e-01 | 96.0% | 96.8% |
| 6uzjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 43.0 | 4.03e-01 | 100.0% | 69.8% |
| 1ujcA00 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 44.0 | 3.25e-01 | 100.0% | 95.5% |
| 2xqnT01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.52 | 37.0 | 3.49e-01 | 76.0% | 61.3% |
| 1q25A03 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.51 | 41.0 | 3.10e-01 | 98.0% | 72.1% |
| 2bhvB01 | 2.40.128.260 | Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI | 0.51 | 39.0 | 2.98e-01 | 98.0% | 96.3% |
ECOD (76)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4161829 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.88 | 81.0 | 6.94e-01 | 100.0% | 76.0% |
| 4088295 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.86 | 78.0 | 6.60e-01 | 100.0% | 77.5% |
| 4230617 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.85 | 78.0 | 6.73e-01 | 100.0% | 91.9% |
| 4457656 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.85 | 74.0 | 4.46e-01 | 96.0% | 21.7% |
| 340101 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.85 | 77.0 | 6.84e-01 | 100.0% | 87.0% |
| 4956851 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.85 | 73.0 | 6.64e-01 | 94.0% | 84.6% |
| 4583050 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 77.0 | 6.83e-01 | 100.0% | 80.0% |
| 5037071 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 71.0 | 6.91e-01 | 92.0% | 98.2% |
| 4077955 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.84 | 77.0 | 6.79e-01 | 100.0% | 95.7% |
| 4067858 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 77.0 | 6.82e-01 | 100.0% | 92.9% |
| 4986053 | 2.1.1.21 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 | 0.84 | 75.0 | 6.48e-01 | 98.0% | 73.3% |
| 3513289 | 2.1.1.63 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_2 | 0.84 | 74.0 | 6.72e-01 | 96.0% | 86.2% |
| 4677730 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.84 | 74.0 | 6.84e-01 | 98.0% | 93.8% |
| 3403141 | 2.1.1.7 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 | 0.84 | 75.0 | 6.48e-01 | 98.0% | 81.3% |
| 3578390 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.84 | 76.0 | 5.03e-01 | 100.0% | 32.6% |
| 4990915 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.83 | 70.0 | 6.22e-01 | 92.0% | 88.6% |
| 4167472 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.83 | 74.0 | 4.47e-01 | 100.0% | 21.9% |
| 4411162 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.83 | 74.0 | 6.47e-01 | 100.0% | 89.3% |
| 4250218 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.83 | 72.0 | 6.64e-01 | 96.0% | 95.3% |
| 4261411 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.82 | 74.0 | 5.83e-01 | 100.0% | 60.0% |
| 4083610 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.82 | 71.0 | 6.50e-01 | 96.0% | 95.4% |
| 4379699 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.81 | 70.0 | 6.43e-01 | 96.0% | 92.3% |
| 4052148 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.81 | 71.0 | 6.54e-01 | 96.0% | 95.2% |
| 4400854 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.81 | 68.0 | 6.41e-01 | 92.0% | 96.7% |
| 4095696 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.81 | 73.0 | 6.37e-01 | 100.0% | 84.9% |
| 4301110 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.81 | 67.0 | 6.17e-01 | 92.0% | 98.5% |
| 5043741 | 2.1.1.21 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 | 0.81 | 72.0 | 6.26e-01 | 100.0% | 73.3% |
| 4200681 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 68.0 | 6.43e-01 | 94.0% | 91.7% |
| 4215880 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.80 | 70.0 | 6.32e-01 | 98.0% | 92.8% |
| 5040373 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 71.0 | 6.29e-01 | 98.0% | 72.9% |
| 5022965 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 68.0 | 6.74e-01 | 94.0% | 92.5% |
| 4505995 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 68.0 | 6.29e-01 | 96.0% | 95.4% |
| 5042551 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.80 | 70.0 | 6.43e-01 | 96.0% | 85.7% |
| 4361731 | 2.1.1.73 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgA_N | 0.79 | 71.0 | 6.47e-01 | 100.0% | 92.3% |
| 3972261 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 69.0 | 6.46e-01 | 96.0% | 98.3% |
| 3593837 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.79 | 69.0 | 5.16e-01 | 100.0% | 58.4% |
| 3961193 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.79 | 69.0 | 6.23e-01 | 100.0% | 81.2% |
| 167712 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.78 | 69.0 | 6.38e-01 | 100.0% | 88.9% |
| 5006052 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.78 | 67.0 | 6.15e-01 | 96.0% | 84.4% |
| 4514328 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 68.0 | 6.38e-01 | 100.0% | 88.3% |
| 5039058 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 67.0 | 6.31e-01 | 100.0% | 88.3% |
| 5017464 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 65.0 | 5.26e-01 | 100.0% | 65.0% |
| 4221644 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 66.0 | 5.97e-01 | 100.0% | 77.1% |
| 3963655 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 65.0 | 6.06e-01 | 100.0% | 84.6% |
| 390 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.76 | 66.0 | 5.87e-01 | 100.0% | 72.2% |
| 4956338 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 65.0 | 6.18e-01 | 98.0% | 90.0% |
| 5059673 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 65.0 | 5.23e-01 | 100.0% | 77.0% |
| 5077797 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.75 | 66.0 | 6.07e-01 | 100.0% | 83.1% |
| 5035058 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.75 | 66.0 | 6.07e-01 | 100.0% | 83.1% |
| 5042160 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.75 | 65.0 | 6.19e-01 | 100.0% | 91.7% |
| 5001509 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.75 | 66.0 | 6.25e-01 | 100.0% | 85.0% |
| 4304764 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.75 | 65.0 | 4.93e-01 | 100.0% | 88.2% |
| 3974652 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.75 | 65.0 | 6.15e-01 | 100.0% | 91.7% |
| 5019244 | 2.1.1.381 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28043 | 0.75 | 64.0 | 5.66e-01 | 100.0% | 98.7% |
| 4936924 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.75 | 63.0 | 5.02e-01 | 98.0% | 60.0% |
| 4033331 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.74 | 66.0 | 6.40e-01 | 100.0% | 94.5% |
| 3587260 | 2.1.1.262 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF31148 | 0.74 | 65.0 | 5.59e-01 | 100.0% | 77.5% |
| 4440715 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 64.0 | 5.95e-01 | 100.0% | 89.2% |
| 5071470 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.74 | 64.0 | 5.81e-01 | 100.0% | 77.1% |
| 5065712 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.74 | 64.0 | 5.79e-01 | 100.0% | 77.1% |
| 4424090 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.74 | 64.0 | 5.63e-01 | 100.0% | 78.7% |
| 5027166 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.73 | 64.0 | 5.68e-01 | 100.0% | 73.0% |
| 3362419 | 2.1.1.149 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CTC1_2 | 0.72 | 62.0 | 4.75e-01 | 100.0% | 60.8% |
| 4962650 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.72 | 61.0 | 5.93e-01 | 98.0% | 94.5% |
| 5045871 | 2.1.1.17 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc | 0.70 | 61.0 | 5.52e-01 | 100.0% | 97.1% |
| 4377440 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 56.0 | 5.51e-01 | 92.0% | 90.9% |
| 3968805 | 2.1.1.19 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NfeD | 0.69 | 58.0 | 5.57e-01 | 100.0% | 86.7% |
| 3290647 | 3174.4.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain › DUF4265 | 0.69 | 48.0 | 4.31e-01 | 100.0% | 52.9% |
| 4062332 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.69 | 57.0 | 5.30e-01 | 96.0% | 93.8% |
| 4376165 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.69 | 56.0 | 5.41e-01 | 98.0% | 95.0% |
| 4951344 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.67 | 59.0 | 4.51e-01 | 100.0% | 95.7% |
| 4162174 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.65 | 53.0 | 4.86e-01 | 100.0% | 89.2% |
| 4338421 | 2.1.1.100 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 | 0.65 | 54.0 | 5.07e-01 | 100.0% | 100.0% |
| 4185700 | 2.1.1.18 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM | 0.63 | 50.0 | 4.95e-01 | 96.0% | 98.2% |
| 4230177 | 2.8.1.2 ↗ | beta barrels › OB-fold › mu transposases-C › mu transposases-C › Mu-transpos_C_2 | 0.57 | 44.0 | 4.15e-01 | 100.0% | 68.6% |
| 3617834 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.56 | 41.0 | 2.65e-01 | 86.0% | 66.2% |
D3
medium
residues 1-16_34-112
Domain cluster:
rep: late_expression_factor_4__YP_009552205__Malacosoma_neustria_nucleopolyhedrovirus__38012__D1-10_35-107_124-149
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05098.19 best | LEF-4 | 74.5 | 1.20e-20 | 96.8% | 17.0% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bgtA01 | 2.40.400.10 | Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like | 0.65 | 50.0 | 3.74e-01 | 82.1% | 93.5% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.60 | 38.0 | 3.96e-01 | 73.7% | 69.8% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.59 | 39.0 | 4.01e-01 | 77.9% | 69.9% |
| 3a27A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 38.0 | 2.89e-01 | 75.8% | 28.8% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.57 | 42.0 | 3.44e-01 | 76.8% | 74.9% |
| 3rtyB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 41.0 | 3.98e-01 | 76.8% | 100.0% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 40.0 | 3.86e-01 | 75.8% | 69.7% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.55 | 42.0 | 3.15e-01 | 83.2% | 47.5% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.55 | 48.0 | 3.75e-01 | 97.9% | 61.0% |
| 2ptfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 48.0 | 4.18e-01 | 97.9% | 96.6% |
| 2vxaA00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.53 | 36.0 | 4.20e-01 | 76.8% | 100.0% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.52 | 38.0 | 3.32e-01 | 78.9% | 92.8% |
| 2p35A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 32.0 | 2.63e-01 | 73.7% | 34.5% |
| 3bczA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.51 | 37.0 | 2.62e-01 | 76.8% | 88.1% |
| 3rt0C00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 43.0 | 3.53e-01 | 93.7% | 81.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4670273 | 868.1.1.8 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C | 0.82 | 77.0 | 5.47e-01 | 100.0% | 76.6% |
| 5067070 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.66 | 47.0 | 4.14e-01 | 73.7% | 71.4% |
| 3995786 | 389.4.1.7 ↗ | few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 | 0.64 | 36.0 | 4.28e-01 | 76.8% | 81.5% |
| 3623538 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.63 | 43.0 | 3.48e-01 | 75.8% | 37.2% |
| 5053266 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.62 | 44.0 | 3.76e-01 | 75.8% | 94.4% |
| 5027270 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.59 | 51.0 | 4.13e-01 | 92.6% | 72.0% |
| 4946915 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 34.0 | 3.33e-01 | 74.7% | 51.4% |
| 4988254 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.59 | 52.0 | 4.21e-01 | 97.9% | 90.6% |
| 4118093 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.59 | 53.0 | 4.46e-01 | 97.9% | 94.8% |
| 4968263 | 1.1.5.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C | 0.57 | 51.0 | 3.87e-01 | 97.9% | 92.3% |
| 3587074 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.57 | 42.0 | 4.04e-01 | 77.9% | 72.7% |
| 3615101 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.57 | 52.0 | 3.46e-01 | 97.9% | 48.5% |
| 4029744 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.56 | 50.0 | 4.40e-01 | 100.0% | 95.2% |
| 2892215 | 5091.1.1.1 ↗ | beta sandwiches › VP4 membrane interaction domain › VP4 membrane interaction domain › VP4 membrane interaction domain › Rota_VP4_MID | 0.56 | 46.0 | 3.44e-01 | 88.4% | 49.8% |
| 3605491 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.56 | 41.0 | 3.75e-01 | 78.9% | 60.0% |
| 1117606 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.56 | 41.0 | 3.66e-01 | 76.8% | 59.7% |
| 4034134 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.54 | 39.0 | 3.56e-01 | 74.7% | 57.6% |
| 3603456 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.54 | 42.0 | 4.37e-01 | 96.8% | 86.7% |
| 4132429 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.54 | 50.0 | 3.64e-01 | 100.0% | 42.0% |
| 3766159 | 309.1.2.1 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD | 0.54 | 39.0 | 3.15e-01 | 76.8% | 83.6% |
| 4327598 | 59.1.1.10 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 | 0.54 | 37.0 | 3.48e-01 | 71.6% | 74.2% |
| 3253686 | 59.1.1.10 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 | 0.53 | 37.0 | 3.48e-01 | 72.6% | 94.2% |
| 3355267 | 872.1.1.0 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like | 0.53 | 40.0 | 4.32e-01 | 77.9% | 98.8% |
| 3719492 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.53 | 47.0 | 3.32e-01 | 100.0% | 58.8% |
| 5052888 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 41.0 | 3.77e-01 | 84.2% | 76.0% |
| 3172837 | 59.1.1.10 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Leo1 | 0.53 | 36.0 | 3.33e-01 | 71.6% | 94.6% |
| 4980234 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 46.0 | 3.78e-01 | 98.9% | 88.5% |
| 4953567 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.53 | 39.0 | 4.26e-01 | 100.0% | 93.8% |
| 4953386 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.53 | 45.0 | 4.01e-01 | 94.7% | 75.0% |
| 4059301 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.52 | 38.0 | 3.67e-01 | 76.8% | 77.3% |
| 5036750 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.52 | 46.0 | 4.07e-01 | 98.9% | 82.9% |
| 3589403 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.51 | 33.0 | 3.15e-01 | 74.7% | 52.5% |
| 4955179 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.50 | 45.0 | 4.06e-01 | 98.9% | 84.6% |
| 4974938 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.50 | 37.0 | 2.90e-01 | 76.8% | 39.7% |