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LEF-4

Euk-Vir

Urbanus_proteus_nucleopolyhedrovirus

LEF-4__YP_009250057__Urbanus_proteus_nucleopolyhedrovirus__1675866

Identity

Accession:
YP_009250057 ↗
Protein ID:
LEF-4
Kingdom:
euk

Quality

81.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-198
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 231.2 3.70e-68 98.5% 43.9%
D2 high residues 207-387
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 231.9 2.30e-68 100.0% 39.8%
D3 high residues 392-446
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 27.5 2.30e-06 100.0% 11.6%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 69.0 6.52e-01 100.0% 93.8%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 66.0 6.17e-01 100.0% 95.7%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 65.0 6.32e-01 100.0% 91.8%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 65.0 5.92e-01 100.0% 87.7%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 64.0 6.16e-01 100.0% 93.8%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 65.0 5.65e-01 100.0% 96.4%
3k0yA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.73 62.0 5.93e-01 98.2% 95.4%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 63.0 5.33e-01 98.2% 91.1%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 62.0 5.72e-01 100.0% 93.1%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 63.0 6.21e-01 100.0% 96.6%
1ckmA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 64.0 5.50e-01 100.0% 65.1%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.71 61.0 5.60e-01 100.0% 94.7%
3er0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 60.0 5.55e-01 100.0% 89.0%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 59.0 5.39e-01 100.0% 87.8%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 59.0 5.31e-01 100.0% 75.6%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 58.0 5.25e-01 100.0% 93.5%
2kcmA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 55.0 5.09e-01 98.2% 89.2%
1kcgB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.66 53.0 4.19e-01 100.0% 41.5%
3zyyX03 3.10.20.880 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 54.0 4.74e-01 100.0% 83.9%
1k3rA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 52.0 5.13e-01 96.4% 89.8%
2g7zA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.61 47.0 3.64e-01 100.0% 38.3%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.60 50.0 4.80e-01 94.5% 96.8%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 46.0 2.77e-01 89.1% 45.7%
3fjyA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.59 50.0 3.57e-01 98.2% 97.1%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.58 38.0 3.00e-01 100.0% 30.6%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.79e-01 100.0% 100.0%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 50.0 4.59e-01 98.2% 88.9%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 45.0 3.92e-01 100.0% 72.6%
7jptA01 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.54 43.0 3.55e-01 100.0% 45.5%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 39.0 2.42e-01 85.5% 32.4%
2ec4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.13e-01 100.0% 55.0%
1ze3D00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.50 39.0 3.14e-01 89.1% 51.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4399115 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.77 69.0 6.56e-01 100.0% 95.4%
338 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.77 69.0 6.52e-01 100.0% 93.8%
4254479 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 67.0 6.04e-01 100.0% 98.7%
4254219 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 66.0 6.24e-01 98.2% 95.4%
3711866 2.1.1.106 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PRS7_OB 0.75 66.0 5.37e-01 100.0% 60.0%
4932460 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.75 66.0 6.38e-01 100.0% 95.2%
3930530 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 67.0 5.67e-01 100.0% 67.8%
4934441 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.75 66.0 6.35e-01 100.0% 92.2%
5023741 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 61.0 6.41e-01 94.5% 100.0%
4934074 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 64.0 5.12e-01 98.2% 62.7%
5030269 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 65.0 5.45e-01 100.0% 72.6%
4352991 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 65.0 6.39e-01 100.0% 95.0%
4339468 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 64.0 5.49e-01 100.0% 75.6%
4953995 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 64.0 4.97e-01 100.0% 59.2%
4863267 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.72 62.0 5.74e-01 98.2% 97.2%
4288723 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.72 63.0 5.75e-01 100.0% 93.3%
5058404 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 63.0 5.01e-01 98.2% 56.4%
4420797 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 63.0 5.48e-01 100.0% 70.6%
4997744 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 61.0 4.90e-01 100.0% 61.7%
3715059 2.1.1.3 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.71 62.0 5.66e-01 100.0% 92.0%
370 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.71 64.0 5.36e-01 100.0% 60.7%
3240790 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 59.0 5.70e-01 96.4% 100.0%
3071227 2.1.1.55 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CusF_Ec 0.71 61.0 5.11e-01 100.0% 72.0%
1954225 3174.4.1.1 beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain › DUF4265 0.71 45.0 4.23e-01 98.2% 53.7%
4082776 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.71 61.0 5.47e-01 100.0% 90.0%
4978946 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 62.0 6.08e-01 98.2% 90.0%
4347147 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 61.0 5.48e-01 100.0% 88.7%
3889658 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 61.0 5.71e-01 100.0% 88.6%
4209293 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 61.0 5.45e-01 100.0% 90.0%
3932275 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 60.0 5.11e-01 100.0% 70.5%
3613173 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 61.0 4.98e-01 100.0% 61.9%
4085660 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 61.0 5.43e-01 100.0% 90.0%
3792756 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 60.0 5.63e-01 100.0% 88.6%
4095696 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.70 62.0 5.65e-01 100.0% 86.3%
3953289 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 60.0 5.27e-01 100.0% 84.7%
4093810 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.69 59.0 4.80e-01 100.0% 60.9%
4968971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 60.0 6.08e-01 98.2% 96.4%
3489384 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 57.0 3.82e-01 92.7% 75.3%
4538990 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 60.0 5.44e-01 100.0% 92.0%
3274098 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 59.0 4.57e-01 98.2% 68.8%
3235739 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 60.0 4.71e-01 100.0% 46.7%
4072975 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.69 59.0 5.31e-01 100.0% 90.0%
4194126 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.69 59.0 5.31e-01 100.0% 90.0%
3249012 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 58.0 5.16e-01 100.0% 96.5%
3603358 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 60.0 5.90e-01 100.0% 91.7%
1736885 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.69 60.0 5.52e-01 100.0% 91.7%
4233469 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.69 58.0 4.55e-01 100.0% 54.4%
5078764 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 58.0 4.60e-01 100.0% 79.2%
5015045 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 57.0 5.31e-01 100.0% 74.3%
4886517 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.68 57.0 4.52e-01 100.0% 54.4%
4193291 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.67 58.0 5.00e-01 100.0% 81.1%
5005814 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 54.0 5.60e-01 94.5% 100.0%
5017215 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 59.0 5.95e-01 98.2% 98.2%
4045594 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 57.0 5.19e-01 98.2% 93.3%
4581327 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.67 57.0 5.63e-01 100.0% 95.0%
4114579 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.67 55.0 4.87e-01 96.4% 77.6%
3516761 2.1.1.28 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › mRNA_cap_C 0.66 58.0 5.05e-01 100.0% 76.5%
3938764 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.66 56.0 4.80e-01 100.0% 61.1%
3953025 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 57.0 5.08e-01 100.0% 78.8%
4637390 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 53.0 5.18e-01 100.0% 83.3%
4445185 2.1.1.115 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PabTrmU54_TRAM_dom 0.65 52.0 5.27e-01 100.0% 90.9%
4362753 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.64 51.0 5.04e-01 100.0% 83.3%
5015043 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 54.0 5.26e-01 100.0% 88.3%
4395096 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.63 54.0 4.83e-01 100.0% 80.0%
4507606 2.25.1.1 beta barrels › OB-fold › OB domain in IgaA › OB domain in IgaA › IgaA 0.63 54.0 4.32e-01 100.0% 53.9%
4538897 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.62 46.0 3.63e-01 100.0% 37.1%
3984632 2.25.1.1 beta barrels › OB-fold › OB domain in IgaA › OB domain in IgaA › IgaA 0.60 51.0 3.78e-01 100.0% 40.0%
3785293 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.59 40.0 3.34e-01 72.7% 62.7%
3962875 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.59 44.0 3.43e-01 100.0% 35.4%
4379785 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.56 45.0 3.50e-01 100.0% 36.7%
3243322 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.55 46.0 3.57e-01 100.0% 40.7%
3900658 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.54 44.0 3.40e-01 100.0% 37.3%
4033664 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.53 42.0 3.02e-01 92.7% 98.4%
4946885 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.52 42.0 3.72e-01 98.2% 95.6%
3164937 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.52 43.0 3.22e-01 100.0% 96.9%
3938986 2485.1.1.55 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 0.52 43.0 3.17e-01 100.0% 54.1%
5025865 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.50 37.0 3.22e-01 89.1% 61.5%