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LEF-4

Euk-Vir

Mythimna_unipuncta_granulovirus_B

LEF-4__YP_009345818__Mythimna_unipuncta_granulovirus_B__2169746

Identity

Accession:
YP_009345818 ↗
Protein ID:
LEF-4
Kingdom:
euk

Quality

84.6 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Betabaculovirus_altermyunipunctae

TaxID: 2169746

Cluster

View cluster (54 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 213-389
PDB
Domain cluster: rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D219-367
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 182.8 1.80e-53 100.0% 39.8%
D2 high residues 394-442
PDB
Domain cluster: rep: late_expression_factor_4__YP_667910__Neodiprion_abietis_NPV__204507__D410-458
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 27.5 2.40e-06 100.0% 11.2%
D3 medium residues 3-16_50-100
PDB
Domain cluster: rep: lef-4__YP_009112642__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D1-12_46-93
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 38.2 1.30e-09 92.3% 11.6%
CATH (72)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 55.0 4.24e-01 90.8% 91.2%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.64 52.0 3.53e-01 92.3% 46.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 51.0 4.46e-01 92.3% 59.6%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.62 49.0 4.11e-01 84.6% 67.0%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.61 48.0 4.41e-01 84.6% 72.1%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.61 51.0 4.52e-01 90.8% 73.1%
2pokA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 50.0 3.67e-01 89.2% 80.6%
4bsjA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 3.84e-01 84.6% 64.2%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.61 45.0 4.17e-01 90.8% 61.2%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 48.0 3.32e-01 86.2% 28.8%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 47.0 3.85e-01 84.6% 56.5%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 50.0 3.69e-01 92.3% 72.7%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.61 53.0 3.76e-01 100.0% 52.9%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 48.0 3.33e-01 86.2% 46.2%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.60 46.0 3.89e-01 83.1% 61.3%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.60 48.0 3.56e-01 90.8% 72.6%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 47.0 3.34e-01 86.2% 36.9%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.59 47.0 3.92e-01 90.8% 74.8%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 42.0 3.10e-01 75.4% 47.2%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 44.0 3.81e-01 84.6% 70.6%
3qjlA02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 46.0 3.79e-01 86.2% 77.3%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.58 45.0 3.89e-01 84.6% 65.0%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.68e-01 92.3% 77.6%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.58 47.0 3.72e-01 95.4% 94.1%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.57 44.0 3.27e-01 81.5% 34.4%
3bczA00 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.57 44.0 2.93e-01 86.2% 88.1%
4c97A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 3.66e-01 90.8% 67.2%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.57 46.0 4.28e-01 89.2% 95.1%
4c98A02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.58e-01 89.2% 70.1%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.56 44.0 3.57e-01 89.2% 53.7%
2v8hA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 45.0 3.70e-01 87.7% 67.2%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.56 43.0 3.06e-01 86.2% 34.4%
3ix9A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.55 43.0 3.22e-01 84.6% 34.3%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.55 45.0 3.55e-01 93.8% 90.7%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 3.79e-01 83.1% 66.3%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 3.56e-01 87.7% 70.3%
2vgaA00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.55 46.0 3.33e-01 95.4% 45.9%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 44.0 3.69e-01 89.2% 73.7%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 41.0 3.61e-01 83.1% 100.0%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.54 41.0 3.57e-01 81.5% 75.0%
6mroA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 40.0 2.93e-01 81.5% 34.0%
6h05A00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 45.0 3.10e-01 93.8% 78.0%
1dpbA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.54 42.0 3.02e-01 92.3% 75.3%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 41.0 2.99e-01 86.2% 62.6%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.54 37.0 3.39e-01 72.3% 93.3%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.54 41.0 3.21e-01 84.6% 54.3%
5k8mA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.47e-01 89.2% 74.8%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 43.0 3.69e-01 89.2% 99.1%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.64e-01 95.4% 53.8%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 42.0 3.10e-01 87.7% 67.4%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.70e-01 89.2% 57.7%
3maeA00 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 42.0 2.97e-01 92.3% 76.5%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.63e-01 90.8% 67.5%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.60e-01 87.7% 100.0%
3lvtA03 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.52e-01 92.3% 72.9%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 42.0 3.72e-01 89.2% 83.8%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.53 39.0 3.71e-01 84.6% 72.9%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 42.0 3.88e-01 92.3% 70.0%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 43.0 3.61e-01 92.3% 67.2%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.53 42.0 3.40e-01 93.8% 62.9%
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 42.0 3.27e-01 93.8% 65.1%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.25e-01 84.6% 62.7%
3l60A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.52 43.0 3.04e-01 93.8% 82.3%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.43e-01 86.2% 73.7%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.52 41.0 4.17e-01 92.3% 100.0%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 40.0 3.66e-01 86.2% 65.2%
4dkaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.51e-01 80.0% 73.3%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 3.75e-01 93.8% 99.0%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 3.77e-01 96.9% 98.1%
2nuhA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 44.0 3.77e-01 95.4% 98.1%
4l3tA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 38.0 2.51e-01 80.0% 33.2%
6qdwt00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 38.0 3.51e-01 87.7% 68.8%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3225768 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.84 57.0 4.06e-01 72.3% 26.5%
3615101 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.77 66.0 4.11e-01 93.8% 27.9%
4132429 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.76 65.0 4.34e-01 93.8% 33.9%
4670273 868.1.1.8 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › SLS1_C 0.76 66.0 4.37e-01 95.4% 60.7%
4118093 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.73 62.0 4.61e-01 90.8% 87.7%
5027270 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.72 57.0 4.12e-01 84.6% 61.1%
2892215 5091.1.1.1 ↗ beta sandwiches › VP4 membrane interaction domain › VP4 membrane interaction domain › VP4 membrane interaction domain › Rota_VP4_MID 0.72 57.0 3.89e-01 87.7% 38.3%
4659258 2003.1.5.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT 0.71 61.0 4.10e-01 90.8% 33.5%
3623538 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.71 55.0 3.99e-01 84.6% 36.7%
4029744 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.69 58.0 4.50e-01 93.8% 66.9%
3603456 304.8.1.82 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.68 55.0 4.90e-01 86.2% 71.1%
3943282 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.68 53.0 4.33e-01 84.6% 58.3%
4955179 304.51.1.7 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.67 53.0 4.25e-01 86.2% 71.5%
3719492 304.102.1.1 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.67 53.0 3.46e-01 90.8% 37.7%
4309280 304.51.1.7 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.66 53.0 4.21e-01 89.2% 68.1%
3687709 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.65 53.0 3.55e-01 86.2% 33.8%
3587074 1.1.13.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.65 51.0 4.36e-01 87.7% 72.7%
3995786 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.65 49.0 4.90e-01 84.6% 80.0%
5053266 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.65 49.0 3.74e-01 83.1% 68.8%
4944896 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.64 50.0 4.08e-01 87.7% 74.2%
3972051 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 51.0 4.14e-01 90.8% 50.0%
4939497 1.1.9.23 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.63 53.0 4.31e-01 93.8% 84.0%
4888780 304.124.1.5 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.63 51.0 3.56e-01 92.3% 46.6%
3589403 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.63 49.0 3.94e-01 83.1% 52.5%
4025055 328.1.1.1 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.63 50.0 4.37e-01 86.2% 73.7%
4974938 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.62 48.0 3.34e-01 83.1% 40.2%
3667432 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 50.0 4.35e-01 86.2% 65.3%
5052888 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 51.0 4.26e-01 98.5% 76.8%
3665392 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 49.0 3.99e-01 86.2% 49.2%
4632598 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 53.0 4.30e-01 95.4% 76.7%
3956950 304.51.1.7 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 0.61 49.0 3.91e-01 90.8% 65.7%
4004140 389.4.1.7 ↗ few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.61 47.0 4.64e-01 83.1% 77.1%
3766159 309.1.2.1 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD 0.61 47.0 3.47e-01 87.7% 83.6%
3591908 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 47.0 3.49e-01 84.6% 50.0%
3952685 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.61 48.0 3.38e-01 89.2% 70.0%
5035788 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.60 47.0 3.73e-01 87.7% 93.8%
5070955 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.60 47.0 3.78e-01 89.2% 75.0%
3355267 872.1.1.0 ↗ a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.60 49.0 4.62e-01 90.8% 98.8%
901 4252.1.1.1 ↗ beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.60 48.0 3.49e-01 90.8% 68.8%
4928518 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.59 48.0 3.43e-01 90.8% 47.7%
5072924 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.58 49.0 3.83e-01 90.8% 74.1%
4953567 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.58 46.0 4.36e-01 87.7% 73.8%
3839035 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.58 45.0 3.38e-01 84.6% 35.0%
3418881 304.8.1.66 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.57 46.0 3.85e-01 86.2% 62.7%
4946915 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 44.0 3.78e-01 84.6% 51.4%
3602774 304.51.1.8 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C 0.57 45.0 3.74e-01 86.2% 77.4%
5077618 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.56 45.0 3.73e-01 90.8% 73.6%
3802659 304.8.1.66 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.56 45.0 3.93e-01 92.3% 64.8%
3270041 872.3.1.7 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_4 0.56 47.0 4.07e-01 96.9% 81.9%
1290797 323.1.1.1 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.56 46.0 3.15e-01 93.8% 74.9%
5040516 323.1.1.1 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.55 44.0 3.09e-01 92.3% 70.0%
3242503 207.1.1.5 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › Recep_L_domain 0.55 42.0 2.54e-01 84.6% 100.0%
4663897 12.1.1.43 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 0.55 44.0 3.59e-01 86.2% 70.8%
3738810 4252.1.1.5 ↗ beta barrels › AttH-like › AttH-like › AttH-like › Svf1 0.55 44.0 3.29e-01 89.2% 69.7%
4943905 323.1.1.1 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.55 45.0 3.08e-01 93.8% 81.9%
4286263 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.55 44.0 3.50e-01 87.7% 75.4%
4928521 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.55 44.0 3.11e-01 89.2% 30.8%
3898132 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.55 43.0 3.46e-01 89.2% 75.7%
3279365 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 41.0 2.92e-01 83.1% 34.9%
4936600 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.54 42.0 3.54e-01 87.7% 77.5%
5033918 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.54 45.0 3.33e-01 93.8% 71.7%
1312442 12.1.1.43 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 0.54 43.0 3.65e-01 90.8% 81.0%
5024124 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.54 42.0 3.99e-01 86.2% 73.8%
3602505 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.54 36.0 3.04e-01 93.8% 40.0%
5077058 304.51.1.1 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.54 41.0 3.45e-01 87.7% 74.4%
3735094 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.54 44.0 3.22e-01 95.4% 47.8%
409322 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.53 42.0 3.67e-01 89.2% 98.1%
3596783 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.53 41.0 3.53e-01 89.2% 59.1%
5052820 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.16e-01 93.8% 52.6%
3974775 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.52 42.0 3.80e-01 93.8% 67.4%
3279708 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.52 41.0 3.45e-01 87.7% 72.2%
4456367 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 43.0 3.51e-01 93.8% 66.4%
5047813 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 40.0 3.11e-01 89.2% 80.0%
1396465 12.1.1.43 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 0.51 40.0 3.27e-01 84.6% 73.9%
4932235 304.5.1.3 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.51 43.0 3.72e-01 93.8% 98.1%
3764712 11.1.1.118 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Adhes-Ig_like 0.51 39.0 3.30e-01 90.8% 52.3%
4946264 323.1.1.1 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › 2-oxoacid_dh 0.51 37.0 2.52e-01 78.5% 68.5%
D4 medium residues 17-49_101-205
PDB
Domain cluster: rep: lef-4__YP_009112642__Agrotis_segetum_nucleopolyhedrovirus_B__1580580__D13-45_94-204
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 129.8 2.20e-37 76.8% 23.5%
PF05098.19 LEF-4 28.2 1.40e-06 27.5% 8.5%