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LEF-4

Euk-Vir

Operophtera_brumata_nucleopolyhedrovirus

LEF-4__YP_009552635__Operophtera_brumata_nucleopolyhedrovirus__1046267

Identity

Accession:
YP_009552635 ↗
Protein ID:
LEF-4
Kingdom:
euk

Quality

80.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-198
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 229.1 1.60e-67 99.0% 44.1%
D2 high residues 206-378
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 235.8 1.50e-69 100.0% 39.6%
D3 high residues 384-435
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05098.19 best LEF-4 27.2 2.80e-06 100.0% 11.2%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 71.0 6.63e-01 100.0% 92.3%
2lssA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 66.0 6.06e-01 100.0% 94.3%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 66.0 6.36e-01 100.0% 94.9%
3k0yA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.74 64.0 6.03e-01 100.0% 95.4%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.74 64.0 5.73e-01 100.0% 93.3%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 64.0 5.74e-01 100.0% 92.0%
3q8dA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 60.0 5.38e-01 100.0% 92.2%
1ckmA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 62.0 5.29e-01 100.0% 63.9%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 59.0 5.66e-01 96.2% 96.7%
2exdA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 59.0 5.31e-01 100.0% 70.3%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.67 39.0 2.25e-01 100.0% 6.5%
1z47A02 2.40.50.300 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 52.0 5.46e-01 100.0% 100.0%
4d05A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.66 58.0 4.67e-01 100.0% 69.3%
3nqiA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.64 55.0 5.17e-01 100.0% 93.8%
1kcgB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.62 49.0 3.90e-01 100.0% 40.7%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.61 53.0 5.39e-01 98.1% 100.0%
2i5hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 53.0 4.76e-01 98.1% 88.9%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.60 52.0 5.30e-01 98.1% 100.0%
1k3rA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 49.0 4.78e-01 100.0% 91.5%
1ypoA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.57 47.0 3.66e-01 100.0% 41.5%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 45.0 4.14e-01 100.0% 74.4%
4m0nA02 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.56 44.0 3.94e-01 90.4% 84.4%
3eoiA00 3.30.450.360 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 36.0 2.85e-01 82.7% 29.3%
3fjyA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 45.0 3.27e-01 100.0% 96.5%
2yvtA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.54 45.0 2.99e-01 100.0% 97.7%
2qdlA02 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.54 44.0 3.93e-01 98.1% 78.3%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.54 43.0 4.12e-01 96.2% 96.8%
1h2eA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 44.0 3.03e-01 100.0% 94.2%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 40.0 3.10e-01 90.4% 47.4%
2ba0A01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 41.0 4.20e-01 100.0% 100.0%
5nkkF01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.80e-01 98.1% 36.7%
3fysA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.51 38.0 3.04e-01 100.0% 35.7%
6e4bA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 41.0 2.89e-01 100.0% 95.1%
3lnnA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.51 36.0 3.05e-01 76.9% 80.2%
3m7nA01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 40.0 4.05e-01 100.0% 94.2%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.50 39.0 3.07e-01 94.2% 48.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4594372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 70.0 5.85e-01 100.0% 73.3%
4399115 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.79 71.0 6.56e-01 100.0% 93.8%
3711866 2.1.1.106 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PRS7_OB 0.79 70.0 5.56e-01 100.0% 59.0%
4254479 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 69.0 6.13e-01 100.0% 97.3%
4254219 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 68.0 6.30e-01 98.1% 93.8%
4259370 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.77 66.0 6.53e-01 96.2% 98.2%
3606816 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 67.0 5.25e-01 100.0% 66.4%
5030269 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 68.0 5.53e-01 100.0% 71.6%
3335468 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 66.0 6.33e-01 100.0% 85.0%
3594041 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 66.0 6.16e-01 100.0% 93.8%
3700732 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 65.0 5.33e-01 100.0% 76.8%
5023741 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 63.0 6.43e-01 96.2% 100.0%
3703907 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 65.0 6.07e-01 100.0% 98.5%
5044374 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 63.0 6.22e-01 96.2% 100.0%
4953995 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 64.0 4.91e-01 100.0% 58.3%
3725926 2.1.1.94 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.74 63.0 5.45e-01 100.0% 87.1%
4992873 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 63.0 6.11e-01 98.1% 94.8%
5058404 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 62.0 4.96e-01 100.0% 56.4%
4978946 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 64.0 6.16e-01 100.0% 90.0%
4972486 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 61.0 6.04e-01 96.2% 98.2%
5047563 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 59.0 5.32e-01 96.2% 96.0%
5017215 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 62.0 6.13e-01 100.0% 98.2%
3274098 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 58.0 4.50e-01 98.1% 68.8%
4968971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 62.0 6.17e-01 100.0% 96.4%
5030699 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 60.0 4.59e-01 98.1% 99.2%
1954225 3174.4.1.1 beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain › DUF4265 0.69 45.0 4.09e-01 98.1% 52.2%
5005814 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 57.0 5.80e-01 96.2% 100.0%
4987320 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.56e-01 100.0% 88.3%
4964634 2.1.1.373 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF7526 0.67 56.0 4.63e-01 96.2% 96.8%
5065332 2.1.1.21 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.67 57.0 5.10e-01 98.1% 72.0%
5040417 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 58.0 5.76e-01 100.0% 96.4%
4962650 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 55.0 5.42e-01 98.1% 94.5%
4646733 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.64 53.0 4.45e-01 100.0% 98.0%
4445185 2.1.1.115 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PabTrmU54_TRAM_dom 0.63 52.0 5.18e-01 100.0% 89.1%
4994958 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 51.0 5.09e-01 98.1% 98.2%
5068326 259.1.1.2 a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.61 49.0 4.48e-01 94.2% 100.0%
5036060 259.1.1.2 a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e 0.61 49.0 4.40e-01 96.2% 98.8%
1866754 6146.2.1.1 a+b two layers › Cas3 C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3 subtype I-F/YPEST C-terminal domain › Cas3-like_C 0.60 48.0 4.05e-01 96.2% 95.0%
4973912 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.59 38.0 3.91e-01 73.1% 70.0%
3963647 2.8.1.0 beta barrels › OB-fold › mu transposases-C › mu transposases-C 0.59 50.0 4.51e-01 100.0% 74.7%
5031728 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.57 46.0 4.19e-01 100.0% 100.0%
2570782 2.10.1.1 beta barrels › OB-fold › CheW › CheW › CheW 0.56 46.0 4.40e-01 100.0% 100.0%
3462439 2003.1.1.72 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GDP_Man_Dehyd 0.56 46.0 3.35e-01 100.0% 97.7%
3434734 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.55 45.0 3.47e-01 100.0% 81.4%
3963519 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.54 44.0 4.19e-01 100.0% 96.9%
5043224 325.1.8.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein 0.54 44.0 4.46e-01 100.0% 100.0%
3581973 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.54 43.0 3.53e-01 100.0% 45.2%
1030850 2.10.1.1 beta barrels › OB-fold › CheW › CheW › CheW 0.54 43.0 4.14e-01 98.1% 95.4%
4964518 268.1.1.3 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2_2 0.53 33.0 2.69e-01 100.0% 29.1%
3900658 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 42.0 3.23e-01 100.0% 37.3%
3958424 7525.1.1.1 a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.52 44.0 3.13e-01 96.2% 100.0%
4946885 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.52 41.0 3.66e-01 98.1% 92.2%
3934390 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.52 40.0 3.19e-01 100.0% 38.6%
3318348 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.52 39.0 3.09e-01 90.4% 50.0%
5025865 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.51 38.0 3.25e-01 90.4% 61.5%
4031542 66.1.1.2 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.51 38.0 3.29e-01 90.4% 64.6%