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LEF-5

Euk-Vir

Buzura_suppressaria_nucleopolyhedrovirus

LEF-5__YP_009001852__Buzura_suppressaria_nucleopolyhedrovirus__74320

Identity

Accession:
YP_009001852 ↗
Protein ID:
LEF-5
Kingdom:
euk

Quality

76.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Buzura_suppressaria_nucleopolyhedrovirus

TaxID: 74320

Cluster

View cluster (46 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 37-133
PDB
Domain cluster: rep: late_expression_factor_5__YP_009117003__Pseudoplusia_includens_SNPV_IE__1592335__D38-134
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04838.19 best Baculo_LEF5 159.9 7.00e-47 99.0% 59.9%
D2 high residues 141-197
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04838.19 best Baculo_LEF5 72.1 7.60e-20 94.7% 34.4%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.69 48.0 4.08e-01 75.4% 60.8%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.68 47.0 3.91e-01 73.7% 64.7%
2etnB01 1.10.287.180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain 0.67 46.0 4.21e-01 71.9% 61.8%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.67 54.0 4.71e-01 89.5% 81.8%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 47.0 3.40e-01 73.7% 51.6%
3sjqC00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 46.0 4.14e-01 71.9% 76.2%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.67 46.0 4.18e-01 71.9% 62.3%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.65 45.0 4.50e-01 75.4% 78.7%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 44.0 4.50e-01 71.9% 90.7%
1br0A00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 52.0 4.27e-01 100.0% 85.8%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.61 49.0 4.37e-01 93.0% 78.8%
3v5uA01 6.10.280.80 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region 0.60 42.0 3.83e-01 73.7% 63.2%
2icwG02 1.10.10.530 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 0.58 49.0 4.33e-01 100.0% 77.5%
3cqcA00 1.20.190.50 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.57 45.0 3.03e-01 93.0% 21.1%
3fkjA02 1.10.10.2240 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 41.0 4.00e-01 100.0% 82.8%
4gczA03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.51 36.0 3.52e-01 73.7% 69.2%
3if4A02 1.20.5.1210 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Integron cassette protein helical domain 0.51 38.0 4.08e-01 84.2% 100.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945539 4168.1.1.1 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP 0.65 46.0 4.60e-01 89.5% 71.7%
3911582 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.63 50.0 3.78e-01 89.5% 64.7%
3605932 109.4.1.623 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 0.63 51.0 2.92e-01 91.2% 18.8%
5047538 159.1.1.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 0.63 45.0 3.62e-01 75.4% 53.6%
3200379 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 50.0 3.02e-01 87.7% 42.0%
3171363 605.8.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › PF27894 0.62 43.0 4.41e-01 73.7% 80.0%
4946918 159.1.1.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 0.62 44.0 3.60e-01 75.4% 53.6%
3719227 109.4.1.623 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd1 0.62 49.0 2.97e-01 89.5% 37.5%
3606849 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.61 43.0 3.65e-01 75.4% 60.0%
4014485 5044.1.1.0 ↗ extended segments › PsbZ-like › PsbZ-like › PsbZ-like 0.61 44.0 3.75e-01 77.2% 64.2%
3999487 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 47.0 3.79e-01 91.2% 85.6%
3686012 3722.1.1.0 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain 0.60 45.0 3.19e-01 86.0% 57.1%
4123079 4168.1.1.0 ↗ alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain 0.59 41.0 4.23e-01 89.5% 76.4%
3596530 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 45.0 3.01e-01 89.5% 49.2%
3770414 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 46.0 3.87e-01 94.7% 96.2%
3589888 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.55 37.0 3.28e-01 71.9% 48.9%