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LEF-8

Euk-Vir

Penaeus_monodon_nudivirus

LEF-8__YP_009051861__Penaeus_monodon_nudivirus__1529056

Identity

Accession:: YP_009051861 ↗
Protein ID:: LEF-8
Kingdom:: euk

Quality

48.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Gammanudivirus› Penaeus_monodon_nudivirus

TaxID: 1529056

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 402-507

PDB

Domain cluster: rep: lef-8__YP_009553422__Tomelloso_virus__2053981__D332-416

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2id0A01	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.53	29.0	3.33e-01	88.7%	73.1%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4994086	4961.1.1.0 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit	0.69	49.0	5.38e-01	72.6%	100.0%
5000299	4961.1.1.0 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit	0.68	47.0	5.06e-01	70.8%	100.0%
3303495	4961.1.1.2 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4	0.68	47.0	4.66e-01	70.8%	98.2%
3491435	4961.1.1.1 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4	0.67	47.0	5.16e-01	71.7%	100.0%
3721265	4961.1.1.2 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4	0.66	46.0	4.86e-01	71.7%	100.0%
3258891	4961.1.1.2 ↗	a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpa2_4	0.65	46.0	4.60e-01	73.6%	98.2%
3163777	3070.1.1.0 ↗	a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins	0.53	34.0	3.87e-01	78.3%	87.5%

D2 medium residues 1-99

PDB

D3 medium residues 100-163_262-276

PDB

D4 medium residues 770-873

PDB

D5 medium residues 898-960

PDB