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LEF-8
Euk-VirHomarus_gammarus_nudivirus
LEF-8__YP_010087656__Homarus_gammarus_nudivirus__2509616
Identity
- Accession:
- YP_010087656 ↗
- Protein ID:
- LEF-8
- Kingdom:
- euk
Quality
49.3
mean pLDDT
Taxonomy
TaxID: 2509616
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 723-758_863-951
Domain cluster:
rep: KU935715.1__AND75470.1__ME3_309__00309__D264-326_420-534
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00562.34 best | RNA_pol_Rpb2_6 | 25.2 | 1.30e-05 | 86.4% | 20.4% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfB06 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.84 | 78.0 | 6.29e-01 | 97.6% | 73.5% |
| 1hqmC01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.83 | 75.0 | 6.13e-01 | 95.2% | 94.9% |
| 4ga6A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.78 | 51.0 | 6.13e-01 | 92.8% | 100.0% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.77 | 47.0 | 5.83e-01 | 92.8% | 100.0% |
| 3hu1A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.75 | 51.0 | 5.74e-01 | 95.2% | 89.6% |
| 1cz4A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.70 | 49.0 | 5.61e-01 | 96.0% | 97.8% |
| 1y5lA02 | 3.40.50.12440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 56.0 | 3.19e-01 | 100.0% | 13.8% |
| 2iv2X04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 46.0 | 5.08e-01 | 92.8% | 100.0% |
| 1h0hA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.59 | 52.0 | 4.59e-01 | 93.6% | 75.0% |
| 7nz1G01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.59 | 44.0 | 4.89e-01 | 90.4% | 100.0% |
| 2napA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.59 | 50.0 | 5.28e-01 | 91.2% | 100.0% |
| 2e7zA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.59 | 51.0 | 4.70e-01 | 93.6% | 84.5% |
| 2ki8A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.59 | 49.0 | 4.98e-01 | 96.0% | 89.6% |
| 1q16A13 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.59 | 54.0 | 5.10e-01 | 100.0% | 92.0% |
| 1dmrA04 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.58 | 51.0 | 4.70e-01 | 96.8% | 83.4% |
| 2vpzA05 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.57 | 50.0 | 4.63e-01 | 95.2% | 83.0% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.51 | 27.0 | 3.41e-01 | 91.2% | 88.9% |
ECOD (79)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3613807 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.86 | 79.0 | 6.96e-01 | 97.6% | 97.7% |
| 4148017 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.85 | 79.0 | 6.39e-01 | 97.6% | 98.2% |
| 4024674 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.85 | 79.0 | 6.34e-01 | 97.6% | 99.1% |
| 4636141 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.85 | 79.0 | 6.82e-01 | 97.6% | 97.2% |
| 4655578 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.85 | 79.0 | 6.25e-01 | 97.6% | 97.8% |
| 4167437 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.85 | 79.0 | 6.62e-01 | 97.6% | 98.5% |
| 4039119 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.84 | 78.0 | 6.00e-01 | 96.8% | 98.0% |
| 4492078 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.84 | 78.0 | 6.03e-01 | 97.6% | 97.6% |
| 4118150 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.84 | 78.0 | 6.98e-01 | 97.6% | 97.6% |
| 4946077 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.84 | 78.0 | 7.08e-01 | 97.6% | 99.4% |
| 4921633 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.83 | 74.0 | 6.16e-01 | 93.6% | 97.1% |
| 3600872 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.83 | 77.0 | 6.90e-01 | 97.6% | 99.4% |
| 4026622 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.82 | 76.0 | 6.57e-01 | 97.6% | 95.6% |
| 4970875 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.77 | 52.0 | 6.13e-01 | 93.6% | 100.0% |
| 5043151 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.77 | 49.0 | 5.97e-01 | 90.4% | 100.0% |
| 5060583 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.76 | 51.0 | 6.05e-01 | 93.6% | 100.0% |
| 5066567 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.76 | 51.0 | 5.76e-01 | 92.0% | 89.5% |
| 5001485 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.76 | 51.0 | 6.00e-01 | 93.6% | 100.0% |
| 4607187 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.76 | 52.0 | 5.86e-01 | 94.4% | 91.6% |
| 4888118 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.76 | 68.0 | 6.19e-01 | 94.4% | 98.1% |
| 4943103 | 1.1.2.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_2 | 0.76 | 51.0 | 6.00e-01 | 92.0% | 100.0% |
| 4488210 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.76 | 51.0 | 6.00e-01 | 94.4% | 100.0% |
| 4902571 | 1.1.2.32 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6, RNA_pol_Rpb2_7 | 0.76 | 68.0 | 6.18e-01 | 94.4% | 98.1% |
| 5076635 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 50.0 | 5.98e-01 | 94.4% | 100.0% |
| 4986590 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 50.0 | 5.97e-01 | 94.4% | 100.0% |
| 4979696 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 50.0 | 5.92e-01 | 92.8% | 100.0% |
| 4948370 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.75 | 54.0 | 5.20e-01 | 97.6% | 66.7% |
| 4097451 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.75 | 50.0 | 5.95e-01 | 92.0% | 100.0% |
| 3409396 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.75 | 51.0 | 5.53e-01 | 94.4% | 82.9% |
| 5055583 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 50.0 | 5.95e-01 | 92.8% | 100.0% |
| 5076554 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.75 | 47.0 | 5.79e-01 | 92.0% | 100.0% |
| 4995354 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.75 | 50.0 | 5.91e-01 | 92.8% | 100.0% |
| 5052052 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.74 | 52.0 | 5.82e-01 | 96.0% | 93.7% |
| 4446061 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 47.0 | 5.72e-01 | 92.0% | 100.0% |
| 4970084 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 50.0 | 5.88e-01 | 90.4% | 100.0% |
| 4024752 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 51.0 | 5.63e-01 | 96.0% | 88.0% |
| 1883479 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.74 | 51.0 | 5.85e-01 | 95.2% | 97.8% |
| 5028227 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.74 | 49.0 | 5.88e-01 | 92.0% | 100.0% |
| 4027677 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 49.0 | 5.78e-01 | 93.6% | 100.0% |
| 3677222 | 1.1.2.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › RNA_pol_Rpb2_6 | 0.73 | 68.0 | 6.31e-01 | 96.8% | 100.0% |
| 3486347 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 53.0 | 5.96e-01 | 97.6% | 97.9% |
| 3707799 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 49.0 | 5.74e-01 | 95.2% | 100.0% |
| 3783660 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 51.0 | 5.67e-01 | 93.6% | 90.0% |
| 4954799 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.73 | 52.0 | 5.82e-01 | 94.4% | 95.8% |
| 3195760 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.73 | 49.0 | 5.66e-01 | 95.2% | 95.6% |
| 3385821 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.73 | 45.0 | 5.42e-01 | 93.6% | 96.2% |
| 3824979 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.72 | 50.0 | 5.76e-01 | 97.6% | 100.0% |
| 4995073 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.71 | 47.0 | 5.59e-01 | 88.8% | 100.0% |
| 3169042 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.71 | 49.0 | 5.47e-01 | 92.8% | 90.0% |
| 3748306 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.70 | 52.0 | 5.84e-01 | 94.4% | 100.0% |
| 4995426 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.69 | 51.0 | 5.46e-01 | 96.0% | 88.2% |
| 5060748 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.68 | 51.0 | 5.46e-01 | 96.0% | 89.1% |
| 5070184 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 48.0 | 5.08e-01 | 72.8% | 90.0% |
| 3278346 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 50.0 | 5.52e-01 | 76.0% | 95.0% |
| 4670243 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.67 | 50.0 | 5.52e-01 | 95.2% | 98.0% |
| 5079113 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 54.0 | 5.48e-01 | 86.4% | 96.8% |
| 3933010 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 48.0 | 5.23e-01 | 97.6% | 90.5% |
| 3284381 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.66 | 46.0 | 5.13e-01 | 72.0% | 96.0% |
| 4032519 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.63 | 49.0 | 5.25e-01 | 82.4% | 93.6% |
| 4978464 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.63 | 51.0 | 5.31e-01 | 94.4% | 93.0% |
| 4975555 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.63 | 53.0 | 5.48e-01 | 96.8% | 95.0% |
| 4936180 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.62 | 51.0 | 5.28e-01 | 96.8% | 91.5% |
| 4948295 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.62 | 50.0 | 4.29e-01 | 84.0% | 57.9% |
| 4950319 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.61 | 51.0 | 5.13e-01 | 94.4% | 86.0% |
| 4978588 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.61 | 50.0 | 5.04e-01 | 86.4% | 93.6% |
| 3332068 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.61 | 52.0 | 4.83e-01 | 92.0% | 100.0% |
| 4970500 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.61 | 52.0 | 5.22e-01 | 96.0% | 91.2% |
| 3287818 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.59 | 53.0 | 4.94e-01 | 96.8% | 88.4% |
| 4978117 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 50.0 | 5.21e-01 | 92.0% | 98.2% |
| 4271172 | 1.3.1.2 ↗ | beta barrels › cradle loop barrel › DP2 DPBB-1 domain › DP2 DPBB-1 domain › PolC_DP2_central | 0.59 | 54.0 | 5.15e-01 | 97.6% | 90.3% |
| 4985608 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 51.0 | 4.71e-01 | 93.6% | 83.1% |
| 3924552 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.59 | 43.0 | 4.45e-01 | 76.8% | 84.2% |
| 21 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.59 | 48.0 | 4.71e-01 | 97.6% | 81.2% |
| 5049516 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.59 | 49.0 | 4.85e-01 | 95.2% | 86.2% |
| 3781177 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.58 | 48.0 | 5.03e-01 | 97.6% | 96.5% |
| 5000887 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.57 | 52.0 | 5.13e-01 | 97.6% | 96.9% |
| 198983 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.57 | 51.0 | 4.74e-01 | 95.2% | 86.8% |
| 4989928 | 1.1.2.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding | 0.57 | 49.0 | 4.99e-01 | 93.6% | 96.7% |
| 3588794 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.56 | 47.0 | 4.44e-01 | 95.2% | 74.7% |
D2
high
residues 760-862
D3
high
residues 974-1018
D4
medium
residues 10-151
D5
medium
residues 236-396
D6
medium
residues 397-576